suba logo
AT1G67590.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Remorin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Remorin family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT2G02170.2); Has 1722 Blast hits to 1339 proteins in 252 species: Archae - 3; Bacteria - 266; Metazoa - 184; Fungi - 142; Plants - 510; Viruses - 4; Other Eukaryotes - 613 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF6UeggNOG:ENOG410Y9NHEMBL:AC008113EMBL:AC011020
EMBL:CP002684EnsemblPlants:AT1G67590EnsemblPlants:AT1G67590.1entrez:843080
ExpressionAtlas:Q9SR48GeneID:843080GO:GO:0005634Gramene:AT1G67590.1
hmmpanther:PTHR31471hmmpanther:PTHR31471:SF15InterPro:IPR005516ncoils:Coil
OMA:SRAVAWDPfam:PF03763PhylomeDB:Q9SR48PIR:G96700
Proteomes:UP000006548RefSeq:NP_564900.1STRING:3702.AT1G67590.1TAIR:AT1G67590
UniGene:At.23765UniGene:At.35630UniProt:Q9SR48
Coordinates (TAIR10) chr1:-:25333137..25334472
Molecular Weight (calculated) 38785.50 Da
IEP (calculated) 9.93
GRAVY (calculated) -0.97
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSSVEDNKG WIGPATPEIS NGFEFQKGSN RTPNHHRSTM GKPAPSKWDD AQKWLSGVGF ARGGGGGGDK SSHHSRSNKP RNSNADDLRL IASASQRERE
101: GEDQYVEYDD EEMAAGRPEV ETKNVDCGES VWRKESSINP TAVIRSVCVR DMGTEMTPIG SQEPSRTATP VRATTPVGRS PVTSPVRASQ RGEAVGVVME
201: TVTEVRRVES NNSEKVNGFV ESKKAMSAME ARAMAWDEAE RAKFMARYKR EEVKIQAWEN HEKRKAEMEM KKMEVKAERM KARAEEKLAN KLAATKRIAE
301: ERRANAEAKL NEKAVKTSEK ADYIRRSGHL PSSFSFSFKL PSRCWCQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)