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AT5G05840.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.979
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF620)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF620); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT3G55720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJCBeggNOG:ENOG410YE9PEMBL:AB005237EMBL:CP002688
EnsemblPlants:AT5G05840EnsemblPlants:AT5G05840.1entrez:830469GeneID:830469
Gramene:AT5G05840.1hmmpanther:PTHR31300hmmpanther:PTHR31300:SF2InterPro:IPR006873
KEGG:ath:AT5G05840OMA:AVCIGERPfam:PF04788PhylomeDB:Q9FFJ4
Proteomes:UP000006548RefSeq:NP_196203.1TAIR:AT5G05840UniGene:At.51050
UniGene:At.66662UniProt:Q9FFJ4
Coordinates (TAIR10) chr5:-:1757268..1760458
Molecular Weight (calculated) 48865.30 Da
IEP (calculated) 5.08
GRAVY (calculated) -0.39
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKLCPNYNL EDGLETVLEV PMPEELFAAS KTKPGWNQMK SYWSKPTATA TGTATATNMT RLFGGRNAEI QLLLGVVGAP LIPLPVQPDH HNDYENPIHK
101: DIKDQPLEMS MAQYIVKQYI AAVGGDRALN AVESMYAMGK VRMTASEFCT GEGSLNSKMV KARSIKSGGG EVGGFVLWQK GIELWCLELV VSGCKISAGS
201: DAKVAWRQTP WHPSHASRGP PRPLRRFLQG LDPKSTANLF ARSVCMGEKK INDEDCFILK LDAEPSALKA RSSSNVEIIR HTVWGCFSQR TGLLIQLEDS
301: HLLRIKAQDD NSIFWETTME SLIQDYRTVD GILVAHAGKS SVSLFRFGEN SDNHSRTRME ETWEIEEMDF NIKGLSMDCF LPPSDLKKDD DEEEEIECGL
401: AANNEKLPMK IRSASLRISS SKVLAIVEEE DESEVTEET
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)