AT5G04885.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 7 plant structures; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20950.2); Has 9897 Blast hits to 9186 proteins in 1453 species: Archae - 69; Bacteria - 6037; Metazoa - 14; Fungi - 1479; Plants - 480; Viruses - 0; Other Eukaryotes - 1818 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1423369..1426628 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72307.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.56 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 665 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRDSVRIVG VLLWMCMWVC CYGDGEYLLY KDPKQTVSDR VADLFGRMTL EEKIGQMVQI DRSVATVNIM RDYFIGSVLS GGGSAPLPEA SAQNWVDMIN 101: EYQKGALVSR LGIPMIYGID AVHGHNNVYN ATIFPHNVGL GATRDPDLVK RIGAATAVEV RATGIPYTFA PCIAVCRDPR WGRCYESYSE DHKVVEDMTD 201: VILGLQGEPP SNYKHGVPFV GGRDKVAACA KHYVGDGGTT RGVNENNTVT DLHGLLSVHM PAYADAVYKG VSTVMVSYSS WNGEKMHANT ELITGYLKGT 301: LKFKGFVISD WQGVDKISTP PHTHYTASVR AAIQAGIDMV MVPFNFTEFV NDLTTLVKNN SIPVTRIDDA VRRILLVKFT MGLFENPLAD YSFSSELGSQ 401: AHRDLAREAV RKSLVLLKNG NKTNPMLPLP RKTSKILVAG THADNLGYQC GGWTITWQGF SGNKNTRGTT LLSAVKSAVD QSTEVVFREN PDAEFIKSNN 501: FAYAIIAVGE PPYAETAGDS DKLTMLDPGP AIISSTCQAV KCVVVVISGR PLVMEPYVAS IDALVAAWLP GTEGQGITDA LFGDHGFSGK LPVTWFRNTE 601: QLPMSYGDTH YDPLFAYGSG LETESVASIV ARSTSASATN TKPCLYTVLV SATLCLFIFP SLSRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)