AT4G33700.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : CBS domain-containing protein with a domain of unknown function (DUF21) | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT2G14520.1); Has 13295 Blast hits to 13266 proteins in 2597 species: Archae - 106; Bacteria - 10306; Metazoa - 262; Fungi - 156; Plants - 233; Viruses - 0; Other Eukaryotes - 2232 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:16176547..16179188 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 47112.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.98 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 424 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAVEYVCCSP NFFIHIAVIV FLVLFAGLMS GLTLGLMSLS LVDLEVLAKS GTPEHRKYAA KILPVVKNQH LLLVTLLICN AAAMETLPIF LDGLVTAWGA 101: ILISVTLILL FGEIIPQSIC SRYGLAIGAT VAPFVRVLVF ICLPVAWPIS KLLDFLLGHR RAALFRRAEL KTLVDFHGNE AGKGGELTHD ETTIIAGALE 201: LSEKMVKDAM TPISDIFVID INAKLDRDLM NLILEKGHSR VPVYYEQPTN IIGLVLVKNL LTINPDEEIP VKNVTIRRIP RVPEILPLYD ILNEFQKGLS 301: HMAVVVRQCD KIHPLPSKNG SVKEARVDVD SEGTPTPQER MLRTKRSLQK WKSFPNRASS FKGGSKSKKW SKDNDADILQ LNGNPLPKLA EEEEAVGIIT 401: MEDVIEELLQ EEIFDETDHH FEDS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)