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AT1G27680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ADPGLC-PPase large subunit
Curator
Summary (TAIR10)
ADP-glucose pyrophosphorylase catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms of the large subunit (ApL1-4) have been described.Mutational analysis of APS1 suggests that APL1 and APL2 can compensate for loss of APS1 catalytic activity,suggesting both have catalytic as well as regulatory functions.
Computational
Description (TAIR10)
ADPGLC-PPase large subunit (APL2); CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Glucose-1-phosphate adenylyltransferase family protein (TAIR:AT4G39210.1); Has 11860 Blast hits to 11712 proteins in 2161 species: Archae - 516; Bacteria - 8154; Metazoa - 62; Fungi - 36; Plants - 1704; Viruses - 0; Other Eukaryotes - 1388 (source: NCBI BLink).
Protein Annotations
BRENDA:2.7.7.27EC:2.7.7.27eggNOG:COG0448eggNOG:ENOG410IMYM
EMBL:AC012375EMBL:AY063927EMBL:AY091251EMBL:CP002684
EMBL:X73366EnsemblPlants:AT1G27680EnsemblPlants:AT1G27680.1entrez:839660
Gene3D:3.90.550.10GeneID:839660Genevisible:P55230GO:GO:0005524
GO:GO:0005978GO:GO:0008878GO:GO:0009507GO:GO:0019252
Gramene:AT1G27680.1gramene_pathway:2.7.7.27gramene_pathway:PWY-622hmmpanther:PTHR22572
hmmpanther:PTHR22572:SF110HOGENOM:HOG000278604InParanoid:P55230InterPro:IPR005835
InterPro:IPR005836InterPro:IPR011004InterPro:IPR011831InterPro:IPR029044
KEGG:00500+2.7.7.27KEGG:00520+2.7.7.27KEGG:ath:AT1G27680KO:K00975
OMA:KVDKCRIPaxDb:P55230Pfam:P55230Pfam:PF00483
PhylomeDB:P55230PIR:G86401PRIDE:P55230PRO:PR:P55230
PROSITE:PS00808PROSITE:PS00809PROSITE:PS00810ProteinModelPortal:P55230
Proteomes:UP000006548RefSeq:NP_174089.1SABIO-RK:P55230scanprosite:PS00808
scanprosite:PS00809scanprosite:PS00810SMR:P55230STRING:3702.AT1G27680.1
SUPFAM:SSF51161SUPFAM:SSF53448TAIR:AT1G27680tair10-symbols:APL2
TIGRfam:TIGR02091TIGRFAMs:TIGR02091UniGene:At.16637UniPathway:UPA00152
unipathway:UPA00164UniProt:P55230
Coordinates (TAIR10) chr1:+:9631630..9634450
Molecular Weight (calculated) 57473.00 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.18
Length 518 amino acids
Sequence (TAIR10)
(BLAST)
001: MESCFPAMKL NQCTFGLNNE IVSERVSAFW GTQVVKPNHL RTTKLRSAPQ KKIQTNLIRS VLTPFVDQES HEPLLRTQNA DPKNVASIIL GGGAGTRLFP
101: LTSKRAKPAV PIGGCYRLID IPMSNCINSG IRKIFILTQF NSFSLNRHLS RTYNFGNGVN FGDGFVEVLA ATQTSGDAGK KWFQGTADAV RQFIWVFEDA
201: KTKNVEHVLI LSGDHLYRMD YMNFVQKHIE SNADITVSCL PMDESRASDF GLLKIDQSGK IIQFSEKPKG DDLKAMQVDT SILGLPPKEA AESPYIASMG
301: VYVFRKEVLL KLLRSSYPTS NDFGSEIIPL AVGEHNVQAF LFNDYWEDIG TIGSFFDANL ALTEQPPKFQ FYDQKTPFFT SPRFLPPTKV DKCRILDSIV
401: SHGCFLRECS VQHSIVGIRS RLESGVELQD TMMMGADFYQ TEAEIASLLA EGKVPVGVGQ NTKIKNCIID KNAKIGKNVV IANADGVEEG DRPEEGFHIR
501: SGITVVLKNA TIRDGLHI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)