AT5G04320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Shugoshin C terminus | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Shugoshin C terminus; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: meiotic chromosome segregation; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAP1, N-terminal (InterPro:IPR006933), Shugoshin, C-terminal (InterPro:IPR011515); BEST Arabidopsis thaliana protein match is: Shugoshin C terminus (TAIR:AT3G10440.1); Has 1148 Blast hits to 928 proteins in 218 species: Archae - 2; Bacteria - 134; Metazoa - 504; Fungi - 92; Plants - 86; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:1209929..1212376 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47740.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.25 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.06 | ||||||||||||||||||||||||||||
| Length | 419 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTLMKALAHR NKLVELSGIE IQKLRINLRS VQEKNLQLAQ ANSQMLAELN TNRDRLKDLQ HELGCKNALL KVKKHLEEQV LPRTHHESKD KVSASASDGD 101: CKSFQVHDIK HKDTKRKRTT RIKSSVSADV KPIPVNDSNS KANRKRRVSG VIDTTGIPEE ICQTEDDIDK GVVSRGVNQD IDNVVNKKFV PDAANPVKES 201: VHRKRQCTRR QSTRFDVQET KQTEKLLEMD GAKESKETAS FSLRRRSARL RHEEAEPCKS LHEGDEVRET IKRRRVSLRL SARFDIQEPH VTETSNADDA 301: RSIVIEESAG SRSESVEPSE SRHETKEITR KRSFSTRRQS TKGKSQTDEA IKEIATDPSL VNTIVQECDQ ETESKDKPKA DENEGMTRRS SVGRPSRHAA 401: EKVQSYREVS LRVKMRRKC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)