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AT5G03795.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.767
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Exostosin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Exostosin family protein; LOCATED IN: membrane; EXPRESSED IN: embryo, sepal, flower; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT3G07620.1); Has 1413 Blast hits to 1401 proteins in 109 species: Archae - 0; Bacteria - 9; Metazoa - 310; Fungi - 4; Plants - 989; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G03795-MONOMERCAZy:GT47EC:2.4.-.-eggNOG:ENOG410XTFH
eggNOG:KOG1021eggNOG:KOG4197EMBL:AB005235EMBL:CP002688
EnsemblPlants:AT5G03795EnsemblPlants:AT5G03795.1entrez:3770626GeneID:3770626
Genevisible:Q9FFN2GO:GO:0000139GO:GO:0016021GO:GO:0016757
GO:GO:0071555Gramene:AT5G03795.1gramene_plant_reactome:5655010gramene_plant_reactome:6877727
hmmpanther:PTHR11062hmmpanther:PTHR11062:SF66HOGENOM:HOG000238847InParanoid:Q9FFN2
InterPro:IPR004263KEGG:ath:AT5G03795OMA:TRFRTNNPaxDb:Q9FFN2
Pfam:PF03016Pfam:Q9FFN2PhylomeDB:Q9FFN2PRIDE:Q9FFN2
PRO:PR:Q9FFN2ProteinModelPortal:Q9FFN2Proteomes:UP000006548RefSeq:NP_001031828.1
STRING:3702.AT5G03795.1SUPFAM:SSF53756TAIR:AT5G03795TMHMM:TMhelix
UniGene:At.5383UniGene:At.75102UniProt:Q9FFN2
Coordinates (TAIR10) chr5:-:1007554..1010373
Molecular Weight (calculated) 58575.40 Da
IEP (calculated) 9.50
GRAVY (calculated) -0.26
Length 518 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDEDVDGKC KNMSACSSTT SYSTKLFLFM VPLVVISGFV FVNIGPKDST SLLTSLSTTT SHLPPPFLST APAPAPSPLL PEILPSLPAS SLSTKVESIQ
101: GDYNRTIQLN MINVTATSNN VSSTASLEPK KRRVLSNLEK IEFKLQKARA SIKAASMDDP VDDPDYVPLG PMYWNAKVFH RSYLEMEKQF KIYVYKEGEP
201: PLFHDGPCKS IYSMEGSFIY EIETDTRFRT NNPDKAHVFY LPFSVVKMVR YVYERNSRDF SPIRNTVKDY INLVGDKYPY WNRSIGADHF ILSCHDWGPE
301: ASFSHPHLGH NSIRALCNAN TSERFKPRKD VSIPEINLRT GSLTGLVGGP SPSSRPILAF FAGGVHGPVR PVLLQHWENK DNDIRVHKYL PRGTSYSDMM
401: RNSKFCICPS GYEVASPRIV EALYSGCVPV LINSGYVPPF SDVLNWRSFS VIVSVEDIPN LKTILTSISP RQYLRMYRRV LKVRRHFEVN SPAKRFDVFH
501: MILHSIWVRR LNVKIREV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)