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AT5G03200.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.895
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G09770.1); Has 2193 Blast hits to 2193 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 1018; Fungi - 101; Plants - 517; Viruses - 90; Other Eukaryotes - 467 (source: NCBI BLink).
Protein Annotations
BioGrid:17184EC:6.3.2.-eggNOG:ENOG410XRAEeggNOG:KOG4265
EMBL:AB005240EMBL:AK117244EMBL:AL163002EMBL:AY088884
EMBL:BT025883EMBL:CP002688EnsemblPlants:AT5G03200EnsemblPlants:AT5G03200.1
entrez:831908Gene3D:3.30.40.10GeneID:831908Genevisible:Q9LYW5
GO:GO:0004842GO:GO:0008270GO:GO:0016874Gramene:AT5G03200.1
hmmpanther:PTHR22996HOGENOM:HOG000239918InParanoid:Q9LYW5IntAct:Q9LYW5
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT5G03200OMA:YANWVNG
PaxDb:Q9LYW5Pfam:PF13920Pfam:Q9LYW5Pfscan:PS50089
PhylomeDB:Q9LYW5PIR:T48341PRIDE:Q9LYW5PRO:PR:Q9LYW5
PROSITE:PS50089ProteinModelPortal:Q9LYW5Proteomes:UP000006548RefSeq:NP_195940.1
SMART:SM00184SMR:Q9LYW5STRING:3702.AT5G03200.1SUPFAM:SSF57850
TAIR:AT5G03200UniGene:At.28243UniGene:At.63785UniPathway:UPA00143
UniProt:Q9LYW5
Coordinates (TAIR10) chr5:-:760450..761667
Molecular Weight (calculated) 37722.50 Da
IEP (calculated) 6.17
GRAVY (calculated) -0.28
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNLISLIFC CGRRQRSNIP PAMETAPLEL PPNRFVFAAV PPYLNPNPNY VDQYPGNCLP PPVTEPPMLP YNFNHLHHYP PNSYQLPHPL FHGGRYPILP
101: PPTYVHQKAV TIRNDVNLKK KTLTLIPDPE NPNRLLVSFT FDASMPGRIT VVFFATEDAE CNLRATKEDT LPPITFDFGE GLGQKFIQSS GTGIDLTAFK
201: DSELFKEVDT DVFPLAVKAE ATPAEEGKSG STNVQITQVV YTKEKGEIKI EVVKQILWVN KRRYELLEIY GIENTVDGSD EGKECVVCLS EPRDTTVLPC
301: RHMCMCSGCA KALRFQTNLC PVCRQPVEML LEINKNG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)