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AT5G02130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
mutant has Growth rate reduction, increased salt sensitivity; Putative Kinesin Light Chain
Computational
Description (TAIR10)
NDP1; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); Has 225 Blast hits to 173 proteins in 57 species: Archae - 4; Bacteria - 100; Metazoa - 49; Fungi - 9; Plants - 38; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHTIeggNOG:ENOG4111R0VEMBL:AL162508EMBL:BT025628
EMBL:CP002688EnsemblPlants:AT5G02130EnsemblPlants:AT5G02130.1entrez:831694
Gene3D:1.25.40.10GeneID:831694GO:GO:0005739GO:GO:0010073
GO:GO:1901703Gramene:AT5G02130.1InterPro:IPR011990KEGG:ath:AT5G02130
OMA:YLHCVGDPfam:PF13181PhylomeDB:Q9LZL9PIR:T48234
Proteomes:UP000006548RefSeq:NP_195833.1STRING:3702.AT5G02130.1SUPFAM:SSF48452
TAIR:AT5G02130tair10-symbols:NDP1UniGene:At.23559UniGene:At.33457
UniProt:Q9LZL9
Coordinates (TAIR10) chr5:-:419747..421958
Molecular Weight (calculated) 45767.00 Da
IEP (calculated) 6.75
GRAVY (calculated) -0.16
Length 420 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRAAAKFSR EAAATIRGRT ISVRGNLIRY STPLRLIHGE ISVPNANHVA IQMVNYALSH ARSQKSDESY AQGMLVLEQC LGNQPNDDQV SHDSKATVLL
101: AMSDLLYESG NSSEAIERLK QVMTLTHSSL AIRVVAVEAL VGLLIQSGQD DASLDVADEF LKLVKESGHE NLQGVVATVK AIKGLAELVK GNIESAESLF
201: RGLENHESCK GNIALSYGEY LHATGNFELA KEMYQKAIQG VTETKESMCS CNMNLKAVSL AATFALGQLE SHIGNFGVAE KTLTDALTKT EEHYGDNHPK
301: VGVILTAVAL MYGNKAKQER SSSILIQEGL YRKALELMKA PPLDSKGIIN MENQEVIALA RAGYAELLLI QENRKSEGEK MKSWAESAWR NKRISLSEAL
401: TLSEPLGKVA IIDARTTRVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)