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AT5G01970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISYBeggNOG:ENOG41128JAEMBL:AL162508EMBL:AY072408
EMBL:BT000237EMBL:CP002688EnsemblPlants:AT5G01970EnsemblPlants:AT5G01970.1
entrez:830706GeneID:830706Gramene:AT5G01970.1hmmpanther:PTHR31016
hmmpanther:PTHR31016:SF6HOGENOM:HOG000241349IntAct:Q9LZN4KEGG:ath:AT5G01970
ncoils:CoilOMA:GSNPADEPhylomeDB:Q9LZN4PIR:T48218
Proteomes:UP000006548RefSeq:NP_195817.1STRING:3702.AT5G01970.1TAIR:AT5G01970
UniGene:At.28192UniGene:At.48970UniGene:At.71061UniProt:Q9LZN4
Coordinates (TAIR10) chr5:-:373014..374651
Molecular Weight (calculated) 39571.50 Da
IEP (calculated) 6.81
GRAVY (calculated) -0.80
Length 351 amino acids
Sequence (TAIR10)
(BLAST)
001: MAYRRRQGIG KFATFKEEVD RLPPESITAV KDRSPPARSS PAFDQPRSKN FTTEPKGLWG VIAQKAKSVI EDDKSSDRST TASQSRFSYL SDEGFKKMDN
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)