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AT4G39610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF617
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF617; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT2G21990.1); Has 262 Blast hits to 261 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG5XeggNOG:ENOG410YICPEMBL:AK118419EMBL:AL078620
EMBL:AL161595EMBL:BT005270EMBL:CP002687EnsemblPlants:AT4G39610
EnsemblPlants:AT4G39610.1entrez:830115GeneID:830115Gramene:AT4G39610.1
hmmpanther:PTHR31696HOGENOM:HOG000238116InterPro:IPR006460KEGG:ath:AT4G39610
OMA:ILEEPLWPfam:PF04759PhylomeDB:Q9SV97PIR:T09377
Proteomes:UP000006548RefSeq:NP_195671.1TAIR:AT4G39610TIGRfam:TIGR01570
TIGRFAMs:TIGR01570UniGene:At.31080UniProt:Q9SV97
Coordinates (TAIR10) chr4:-:18393808..18394602
Molecular Weight (calculated) 29058.70 Da
IEP (calculated) 9.10
GRAVY (calculated) -0.53
Length 264 amino acids
Sequence (TAIR10)
(BLAST)
001: MGESSNPMAT SSSSSSSSIP PSSPTPSPTS TTTPPRQHPL LQPPSSKKKK NRTNVFRVLR TVFRSFPIFT TPSVACKIPV IHPGLGLPDP HHNTSRITGT
101: LFGYRKGRVS LSIQENPKCL PSLVVELAMQ TTTLQKELST GMVRIALETE KQPRADNNNS KTEKKTDILE EPLWTMYCKG EKTGYGVKRE ATEEDLNVME
201: LLRPVSMGAG VLPGNSESEG PDGEMAYMRA YFERVIGSKD SETFYMLSPE GNNGPELSFF FVRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)