AT4G37190.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation binding site (InterPro:IPR013838), Misato Segment II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal (InterPro:IPR019746); Has 345 Blast hits to 341 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:17507155..17509512 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62207.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.57 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||
| Length | 562 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MREIVTIQVG EFANFVGSHF WNFQDELLGL ASDPESDPIF RNHNLDMDVL YRSGETQQGV ATYTPRLVSV NLKGALGTMS SRGTLYNEGS SSRSDSSATW 101: FGDVDTQRSE PRKRNLFLQS LYEEEHVVGK EKAKEIEDKD IVGCLDEEVE CWTDFSKSHY HPQSLYELNG LWMDSQAFNN YGIGKDVFSE ASRGEEICDR 201: LRFFVEECDH IQGIKFLVDD SGGFSAVAAD FLENMADEYT NVPVLLYSVR TPMSQMSSKK TVSNKLHDAI SFSRLSSFCK LFTPIGLPSL TGSKASKFLN 301: LGDEKPYRSS AVYAAALHSS TIPFRMQPTS SDSSEVSNSM DVNTLVQLLT GRGRQNIVAI LDSAMPAPTL AGKQLENTLL TSLQALTPEV TEDVEDNQAV 401: ESMCILGALR SEDKEALVSE VKNAVDASYE QATTKGKPLF CNLSVSRCPL PVPLPFPSIF GNLVGRKGEI LSSPVSDSLY RGSLDVHSIP VATRWRSSSA 501: ILPFLETRMG NLEKLGIQWG AMGSDVVRAW GFGREELQEM RENLSKMVSE LNPQFFESSD SD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)