AT4G36940.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.985 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : nicotinate phosphoribosyltransferase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
nicotinate phosphoribosyltransferase 1 (NAPRT1); FUNCTIONS IN: nicotinate phosphoribosyltransferase activity; INVOLVED IN: pyridine nucleotide biosynthetic process, nicotinate nucleotide salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nicotinate phosphoribosyltransferase-related (InterPro:IPR007229), Nicotinate phosphoribosyltransferase putative (InterPro:IPR006405), Nicotinate phosphoribosyltransferase-like (InterPro:IPR015977); BEST Arabidopsis thaliana protein match is: nicotinate phosphoribosyltransferase 2 (TAIR:AT2G23420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr4:+:17416938..17419883 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 62424.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 559 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEKKENGLDG KQSGRVINGP TNPMVTPLLN DLYQFTMAYA YWKAGKQSER SVFDLYFRKN PFGGEYTIFA GLEECIKFLA NFNLTDEEID FVRDSLPGCE 101: EAFCDYLRGL DCSDIEVYAI SEGSVVFPKV PLLRIEGPVA VVQLLETPFL NLINYASLVA TNAARHRFVA GKSKLLLEFG ARRAQGPDGA ISASKYCYLG 201: GFDATSNVAA GKLFGIPLRG THSHAFVSSF MSLDEIVDKV LRSSDGKSTC KDFICLVQTC LTKIQNSSSL QGIFSETNQS ELAAFISYAL AFPNSFLALV 301: DTYDVMKSGI PNFCAVALAL NELGYKAVGI RLDSGDLAYL STEVRKFFCA IERDLKVPDF GKMIVTASND LNEETVDALN KQGHEVDAFG IGTNLVTCYA 401: QAALGCVFKL VEINNQPRIK LSEDVTKVSI PCKKRTYRLF GKEGYPLVDI MTGENEPPPK VGERLLCRHP FNESKRAYVV PQRVEELLKC YWRGNADEAR 501: EELEPLKELR NRCIKQLENM RPDHMRRLNP TPYKVSVSAK LYDFIHFLWL NEAPVGELH |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)