AT4G36630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.958 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Vacuolar sorting protein 39 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
EMBRYO DEFECTIVE 2754 (EMB2754); FUNCTIONS IN: small GTPase regulator activity, binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Citron-like (InterPro:IPR001180), Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 (InterPro:IPR019452), Armadillo-type fold (InterPro:IPR016024), Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 (InterPro:IPR019453); Has 871 Blast hits to 660 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 376; Fungi - 292; Plants - 87; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17272088..17276524 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110645.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.99 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1000 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVHNAYDSFQ LLKDCPARID AVESYGSKLF AGCYDGSLRI YSPPESSASD PSELHQETYV LEKTVAGFSK KPIVAMEVLA SRELLLSLSE SIAFHGLPNL 101: ETVAVITKAK GANAYSWDDR RGFLCFSRQK RVCVFKHDGG GGFVEVRDYG VPDTVKSISW CGENICLGIK KEYVILNTAN GTLSEVFPSG RVAPPLVISL 201: PSGELILGKE NIGVFVDQNG KLLQTERICW SEAPTSIVIQ NPYAIALLPR RVEVRLLRSP YPLIQTIVLQ NIRRLVKSNN AVIVGLDNSV YVLFPVSIGA 301: QIVQLTASGN FEEALALCKV LPPDESSLRA AKESSIHTRF AHYLFENGSY EEAMEHFLAS QVDITHVLSM YPSIILPKTT IIPQPDKMVD ISGDEASLSR 401: GSSGISDDME SSSPRYFLES EDNADLESKK MSHNTLMALI KYLLKRRPAV IEKATSEGTE EVISDAVGKT YGANDSSKSK KSSKGRGMIP LNSGAREMAA 501: ILDTALLQAL LHTGQSGAAI ELLKGVNYSD VKICEEILMK SKNYSALLEL FKSNSMHHEA LKLLNQLADE SKTNQSQTDV TQIFSPELII EYLKPLCRTD 601: PMLVLEYSML VLESCPTQTI DLFLSGNISA DLVNSYLKQH APNMQGRYLE LMMAMNDTAV SGNLQNEMVQ IYLSEVLDLY AAKSAQQKWD EKDHPPERKK 701: LLSALESISG YSPQPLLKRL PRDALYEERA VILGKMNQHE LALSIYVHKL HAPDLALAYC DRIYESVTYL PSGKPSSNIY LTVLQIYLNP KKSAKDFAKR 801: IVALGSFESS DTTKMMDSVL SSKAKGGRSK KIVAIEGAED MRVGLSSSTD SGRSDVDTEE PLEEGDSTVM ISEVLDLLSQ RWERINGAQA LKLLPRETKL 901: HNLLPFLAPL LRNSSEAHRN FSVIKSLRQS ENLQVKEELY KHRKGVAQVT SESMCSLCNK KIGTSVFAVY PNGKTLVHFV CFRDSQGMKA VSKTTHGRRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)