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AT4G36190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Serine carboxypeptidase S28 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Serine carboxypeptidase S28 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, guard cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: Serine carboxypeptidase S28 family protein (TAIR:AT4G36195.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSGGeggNOG:KOG2182EMBL:BT030459EMBL:CP002687
EnsemblPlants:AT4G36190EnsemblPlants:AT4G36190.1entrez:829776ESTHER:arath-a4vcl8
Gene3D:3.40.50.1820GeneID:829776GO:GO:0004180GO:GO:0005773
GO:GO:0008236Gramene:AT4G36190.1hmmpanther:PTHR11010hmmpanther:PTHR11010:SF42
HOGENOM:HOG000267153InterPro:IPR008758InterPro:IPR029058KEGG:ath:AT4G36190
MEROPS:S28.A04OMA:SAGPECEPfam:PF05577PhylomeDB:A4VCL8
Proteomes:UP000006548RefSeq:NP_567998.3SMR:A4VCL8STRING:3702.AT4G36190.1
SUPFAM:SSF53474TAIR:AT4G36190TMHMM:TMhelixUniGene:At.43129
UniProt:A4VCL8
Coordinates (TAIR10) chr4:+:17124052..17126643
Molecular Weight (calculated) 54213.20 Da
IEP (calculated) 7.15
GRAVY (calculated) -0.27
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSELGFALL TTFTVLLSYL SFSNGLLQPR RISHGLSKSS KYLTRDELWF TQTLDHYSPS DHRKFRQRYY EYLDHLRVPD GPIFLMICGE GPCNGITNNY
101: ISVLAKKFDA GIVSLEHRYY GKSSPFKSLA TKNLKYLSSK QALSDLATFR QYYQDSLNVK FNRSSNVENP WFFFGVSYSG ALSAWFRLKF PHLTCGSLAS
201: SAVVRAVYEF PEFDQQIAES AGPECETALQ ETNKLLELGL KVNNRAVKAL FNATELDVDA DFLYLIADAG VMAIQYGNPD KLCVPLVEAQ KNGGDLVEAY
301: AKYVREFCMG VFGQSSKTYS RKHLLDTAVT LESADRLWWF QVCTEVAYFQ VAPANDSIRS HQINTEYHLD LCKSLFGKGV YPEVDATNLY YGSDKIAATK
401: IIFTNGSQDP WRHASKQTSS PDLPSYIMTC HNCGHGSDLR GCPQSAMVIE GDAQNCSSPD AVNKVRQHMI KHIDLWLSEC RG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)