AT4G30090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : embryo defective 1353 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 1353 (emb1353); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G31340.1); Has 350 Blast hits to 345 proteins in 81 species: Archae - 4; Bacteria - 10; Metazoa - 172; Fungi - 10; Plants - 96; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14709135..14711612 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44817.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.37 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||
| Length | 388 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFFKLLLFL FLVTLQIASF TGNGEASSSS SENNGCNGDQ NHLLNELKST VSALQSIIKE KNQELLSKEE KIRGLELYIR EKPYLFESEI DFSQFENPVK 101: HASEVEEKVY ELQKQVFGLK REVETQRKRR LEVEAELADK KVAQLSSKLE NIDGWFLSKL GLNPTESQAY LMTLWHQHLS PTLHTTLQMV SMKIEQVQKW 201: SEPHIETLNS QWIPSIKDAC VTITIYLEPK VQYITDKSIE LLYTSKQALT PHLIQGFDAS YYYLEVIRTH THPYTTRIMT LTKPHLERVQ VALEPYTENV 301: RHGFQKLVNS TKIYHQQAQE MLKNNEITKP VATMDLAWVG ATALIGFPLI FIIKLLSAVS NPKGKKRHNH KKEPTTGYRR AKRRHPHQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)