AT4G31770.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.792 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : debranching enzyme 1 | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a RNA lariat debranching enzyme required for embryogenesis. | ||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
debranching enzyme 1 (DBR1); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Lariat debranching enzyme, C-terminal (InterPro:IPR007708); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:15370296..15372422 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 48177.90 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.86 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||
Length | 418 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKIAIEGCMH GDLDNVYKTI QHYEQIHNTK VDLLLCCGDF QAVRNEKDMD SLNVPRKYRE MKSFWKYYSG QEVAPIPTIF IGGNHEASNY LWELYYGGWA 101: ATNIYFLGFA GVVKFGNVRI GGLSGIYNER HYRSGHFERP PYNESTIRSV YHVRDYDVQK LMQLEEPLDI FLSHDWPVGI TDYGDSESLM RQKPYFRQEI 201: EEKTLGSKPA ALLLEKLKPQ YWFSAHLHCK FAAAVQHGND GSVTKFLALD KCLPGKKFLQ IIEIESEPGP FEVLYDEEWL AITRKFNSIF PLTRRYTNVS 301: TAGTIQESRE WVRKKLEERQ FKPFEFARTV PAYNPSQRVF DSIPEIPQNP QTLSLLELLG LPYLLDSSPV TGERTDIPAS LAPSDLPTYD SEEIPIDDID 401: EIEEMEEAKA DDHTRDDA |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)