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AT4G31770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.792
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : debranching enzyme 1
Curator
Summary (TAIR10)
Encodes a RNA lariat debranching enzyme required for embryogenesis.
Computational
Description (TAIR10)
debranching enzyme 1 (DBR1); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Lariat debranching enzyme, C-terminal (InterPro:IPR007708); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:829305EC:3.1.-.-eggNOG:ENOG410XP0FeggNOG:KOG2863
EMBL:BT028963EnsemblPlants:AT4G31770EnsemblPlants:AT4G31770.1entrez:829305
ExpressionAtlas:Q0D241Gene3D:3.60.21.10GeneID:829305GO:GO:0006397
GO:GO:0016788Gramene:AT4G31770.1hmmpanther:PTHR12849InterPro:IPR004843
InterPro:IPR007708InterPro:IPR029052KEGG:ath:AT4G31770KO:K18328
OMA:EYGNWQKPaxDb:Q0D241Pfam:PF00149Pfam:PF05011
Pfam:Q94K01PhylomeDB:Q0D241PRIDE:Q0D241ProteinModelPortal:Q0D241
RefSeq:NP_567881.1SMART:SM01124SMR:Q0D241STRING:3702.AT4G31770.1
SUPFAM:SSF56300TAIR:AT4G31770tair10-symbols:ATDBR1tair10-symbols:DBR1
UniGene:At.2351UniProt:Q0D241UniProt:Q94K01
Coordinates (TAIR10) chr4:-:15370296..15372422
Molecular Weight (calculated) 48177.90 Da
IEP (calculated) 4.86
GRAVY (calculated) -0.50
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIAIEGCMH GDLDNVYKTI QHYEQIHNTK VDLLLCCGDF QAVRNEKDMD SLNVPRKYRE MKSFWKYYSG QEVAPIPTIF IGGNHEASNY LWELYYGGWA
101: ATNIYFLGFA GVVKFGNVRI GGLSGIYNER HYRSGHFERP PYNESTIRSV YHVRDYDVQK LMQLEEPLDI FLSHDWPVGI TDYGDSESLM RQKPYFRQEI
201: EEKTLGSKPA ALLLEKLKPQ YWFSAHLHCK FAAAVQHGND GSVTKFLALD KCLPGKKFLQ IIEIESEPGP FEVLYDEEWL AITRKFNSIF PLTRRYTNVS
301: TAGTIQESRE WVRKKLEERQ FKPFEFARTV PAYNPSQRVF DSIPEIPQNP QTLSLLELLG LPYLLDSSPV TGERTDIPAS LAPSDLPTYD SEEIPIDDID
401: EIEEMEEAKA DDHTRDDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)