AT2G47680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.604 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc finger (CCCH type) helicase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc finger (CCCH type) helicase family protein; FUNCTIONS IN: helicase activity, zinc ion binding, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G01130.1); Has 9601 Blast hits to 8936 proteins in 1526 species: Archae - 0; Bacteria - 3317; Metazoa - 2456; Fungi - 1337; Plants - 806; Viruses - 205; Other Eukaryotes - 1480 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:19545828..19550871 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115091.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.62 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1015 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAVSSPTSSS SSSESLPLPS SNFASLPIMA MKRRIIDKIL ENRVTLIVGE PGCGKSSQVP QFLLEANMAP ILCTQPRRFA VVAVAKMVAK SRNSDLGGEI 0101: GYHIGHSKIL TEGSKILFKT AGVLLDEMLD KGLNALKYKV IILDEVHERS VESDLVLVCV KQFLMKNNDL RVVLMSATAD ITRYRDYFKE LGRGERVEVV 0201: AIPSPDQRTI FQRRVLYLEQ VAGLLGVSSD LSAYCPGPSP SSADTEIKPE LQNLIHDLIL YIHEKEPDIE KSILVFLPTY YSLEQQYHQL EPFFASFEVH 0301: ILHRSIDTEQ ALAAMKICRS RRKVILATNI AESSVTIPKV AYVIDSCRSL QVFWDPSRKR DAVQLVWVSR SQAEQRRGRT GRTCDGEVYR LVPSAFFNKL 0401: EEHEPPSILK LSLRQQVLHI CCTESRAIND ANALLAKAMD PPDPDVVDDA LRMLLSIQAL RKSPRGRYEP TFYGRLLASF PLSFDASILV VKFGEMGMLR 0501: QGILLGVLMD TLPLPIHHPF GDDSLFLEYV DHYFGGSKTI SGGRREMVLM ANFCAFQFWQ RVFKDKHRLE NLKQLLSKEK DKDLKLMFPE IEKEWCDFHN 0601: IAQSSFYHVS ELYEDTLSSF HRFRPQFISS SDSQPTYYNP YEFDHTCYIE CQPSEDKYLH SEDVDNNQPP PEVRKCVSVP FVPPNAFQAN AIAENMASII 0701: KEIRTQCTPS ESDNGHGALE PEDYVEYGEA PVCVYFLNGY CNRGGQCTFT HTLQSTRPAC KFFASSQGCR NGESCLFSHA MRRRTTSYLP PPQCLPEEDG 0801: SSTSPLLDLF PTSSEGCILV FDDSDMHFTS SIANRYPSWR ILSTSSSSET LFCDSSLADT RIFWGLNHPY QTIISKAGRE NPIPWNEVKC VLWFLNPDSY 0901: ADTPEKQKTI LQNFFEHMAI RLLGDKLYKI RVVLTMNNVR FSLLQVEKLA RESFFFLGES FPHDSESFGA FQDTLTIQKP MLVSRPISYV FNLHPPSDIQ 1001: FGNYTSLLRK SLHNK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)