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AT1G62730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Terpenoid synthases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Terpenoid synthases superfamily protein; FUNCTIONS IN: transferase activity; INVOLVED IN: biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Squalene/phytoene synthase (InterPro:IPR002060); Has 1013 Blast hits to 1013 proteins in 466 species: Archae - 0; Bacteria - 638; Metazoa - 104; Fungi - 106; Plants - 45; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1562eggNOG:KOG4411EMBL:AC007190EMBL:AY085475
EMBL:BT026070EMBL:CP002684EnsemblPlants:AT1G62730EnsemblPlants:AT1G62730.1
entrez:842571Gene3D:1.10.600.10GeneID:842571GO:GO:0009058
GO:GO:0016740Gramene:AT1G62730.1hmmpanther:PTHR21181hmmpanther:PTHR21181:SF13
HOGENOM:HOG000146031InterPro:IPR002060InterPro:IPR008949KEGG:ath:AT1G62730
KO:K18163OMA:ALPYHASPfam:PF00494PhylomeDB:Q9SI77
PIR:D96652Proteomes:UP000006548RefSeq:NP_564800.1STRING:3702.AT1G62730.1
SUPFAM:SSF48576TAIR:AT1G62730UniGene:At.36229UniGene:At.71290
UniProt:Q9SI77
Coordinates (TAIR10) chr1:-:23229204..23230118
Molecular Weight (calculated) 34034.10 Da
IEP (calculated) 9.00
GRAVY (calculated) -0.16
Length 304 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGGGSSSLR SALSYCVQQV RNYDYHHYLC LLELPTEMRK AAFALRAFNV ETARAMDVAS DPKIGLMRLL WWQEAIDKLY TKKPINHPAA QALSWAISEH
101: NISKPWLKRS VDARIRDAQR EVDDIPESIA ELEKYAEDTV STLLYNTLQA GGISSTTADH AASHIGKASG LVLLLKSLPY HCTRNRHQSY IPADLAEKHG
201: LLVKQGGRLE ILLDNDSREG LSNVVFEIAS VANAHLLKAR ELAGKVPAEA KPVLLHSVPV QVLLDSLNKV QFDVFDPRIQ RGVLGVPPLL FQFKLKWYSW
301: RAMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)