suba logo
AT4G29150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : IQ-domain 25
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 25 (IQD25); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 26 (TAIR:AT3G16490.1); Has 784 Blast hits to 779 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 2; Plants - 731; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTIAeggNOG:ENOG41107THEMBL:CP002687EnsemblPlants:AT4G29150
EnsemblPlants:AT4G29150.1entrez:829036GeneID:829036Gramene:AT4G29150.1
hmmpanther:PTHR32295hmmpanther:PTHR32295:SF22InParanoid:F4JMV6InterPro:IPR000048
InterPro:IPR025064InterPro:IPR027417iPTMnet:F4JMV6KEGG:ath:AT4G29150
OMA:KSREHRAPaxDb:F4JMV6Pfam:PF00612Pfam:PF13178
Pfscan:PS50096PRIDE:F4JMV6PROSITE:PS50096ProteinModelPortal:F4JMV6
Proteomes:UP000006548RefSeq:NP_194644.2SMART:SM00015SMR:F4JMV6
SUPFAM:SSF52540TAIR:AT4G29150tair10-symbols:IQD25UniGene:At.31955
UniProt:F4JMV6
Coordinates (TAIR10) chr4:+:14378770..14380340
Molecular Weight (calculated) 43343.70 Da
IEP (calculated) 11.50
GRAVY (calculated) -0.55
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKNLTKLTR VKRETKMGRA TRWFKGLFGI KPSSCSGTDS GTISNRLDRS LCDSYETIPP NISEKEAAWL RSFYAAGEEE KERRTHAIAV AAATAAAADA
101: AVAAAKAAAA VVRLQGQGKS GPLGGGKSRE HRAAMQIQCA FRGYLARKAL RALRGVVKIQ ALVRGFLVRN QAAATLRSME ALVRAQKTVK IQRALRRNGN
201: AAPARKSTER FSGSLENRNN GEETAKIVEV DTGTRPGTYR IRAPVLSGSD FLDNPFRRTL SSPLSGRVPP RLSMPKPEWE ECSSKFPTAQ STPRFSGGSP
301: ARSVCCSGGG VEAEVDTEAD ANRFCFLSGE FNSGYMADTT SFRAKLRSHS APRQRPESNA SAGGWRRSIG GGGVRMQRQS CSGVREAVVG NIERRRMRW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)