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AT5G52860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT4G25750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20608eggNOG:COG1131eggNOG:KOG0061EMBL:AB009055
EMBL:CP002688EnsemblPlants:AT5G52860EnsemblPlants:AT5G52860.1entrez:835363
Gene3D:3.40.50.300GeneID:835363Genevisible:Q9FLX5GO:GO:0005524
GO:GO:0005886GO:GO:0016021GO:GO:0042626GO:GO:0055085
Gramene:AT5G52860.1hmmpanther:PTHR19241hmmpanther:PTHR19241:SF290HOGENOM:HOG000238446
InParanoid:Q9FLX5InterPro:IPR003439InterPro:IPR003593InterPro:IPR013525
InterPro:IPR017871InterPro:IPR027417KEGG:ath:AT5G52860MINT:MINT-8066836
OMA:CLASKCLPaxDb:Q9FLX5Pfam:PF00005Pfam:PF01061
Pfam:Q9FLX5Pfscan:PS50893PhylomeDB:Q9FLX5PRIDE:Q9FLX5
PRO:PR:Q9FLX5PROSITE:PS00211PROSITE:PS50893ProteinModelPortal:Q9FLX5
Proteomes:UP000006548RefSeq:NP_200098.1scanprosite:PS00211SMART:SM00382
SMR:Q9FLX5STRING:3702.AT5G52860.1SUPFAM:SSF52540TAIR:AT5G52860
TMHMM:TMhelixUniGene:At.29590UniProt:Q9FLX5
Coordinates (TAIR10) chr5:-:21419776..21421545
Molecular Weight (calculated) 65937.30 Da
IEP (calculated) 9.70
GRAVY (calculated) 0.41
Length 589 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIPPSPPPE TAAYTLTTSS ISYTIPKTSL SLLRFPATEP PSFILRNITL TAHPTEILAV VGPSGAGKST LLDILASKTS PTSGSILLNS IPINPSSYRK
101: ISSYVPQHDS FFPLLTVSET FSFAACLLLP NPSIVSETVT SLLSELNLTH LSHTRLAQGL SGGERRRVSI GLSLLHDPCF LLLDEPTSGL DSKSAFDVIH
201: ILKSIAVSRQ RTVILSIHQP SFKILSIIDR LLLLSKGTVV YHGRLDSLEG FLLFKGFTVP PQLNSLEYAM EILQELRESD GNTDATALPS IENRKQREKQ
301: SIVRYRKSRI TEISLLARRF WKIIYRTRQL LLTNALEALV VGLVLGTIYI NIGIGKAGIE KRFGMFAFTL TFLLSSTTET LPIFINERPI LLRETSSGIY
401: RLSSHILANT LVFLPYLFVI SIIYSVSVYF LIGLCPTWQA FGYFVLVIWI ILLMANSFVL FLSSLAPNYI TGTSLVTILL AAFFLFSGYF ISKESLPKYW
501: LFMYFFSMYK YALDALLINE YSCLASKCLV WLEEAQTKIC MVTGGDVLKK KGLHEKQRWF NVYVLLGFFV LYRVLCFLAL LRRVSGSKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)