AT4G30250.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.961 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:14811262..14812821 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59514.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.78 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 519 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDYWTTMAS LLGMLAFCQT IVQLVFPPEL RLAFLHFLTR IRHVFSSHIY FDITEIDGVN TNELYNAVQL YLSSSVTVND AVSSSNNNTR LSLTRVPNSS 101: SVTFGLSNND RITDVFNGVT ILWEHVVVQR QVQSFSWRPM PEEKRGFTLQ INKRDKALVL DSYLDYIVGK SEEIRRRNEE RLLYTNSRGV SLDARSHPWD 201: SVRFKHPSTF DTLAMDPEKK KRIMEDLREF ANGQGFYQKT GRAWKRGYLL YGPPGTGKSS LIAAMANYLG YDIYDLELTE VQNNSELRKL LMKTSSKSII 301: VIEDIDCSIS LTKRGKNKKK NGSYEYDPGL TNGSGLEEPG SSVTLSGLLN FTDGLWSCCG SEKIFVFTTN HIEKLDSALM RSGRMDMHVH MGFCKFPALK 401: ILLKNYLRLE EEDMDSVVLK EMEECVEEAE ITPADVSEVL IRNRSDAEKA VREIVSVLKE RVVKRRKSVG LKKKKQEGQE EEEEAEEEQE KRALDSPNRR 501: NREVCGFREE EEEEDEKEK |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)