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AT4G28820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.836
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HIT-type Zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HIT-type Zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 375 Blast hits to 372 proteins in 152 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 117; Plants - 47; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41123YYeggNOG:KOG2857EMBL:BT025166EMBL:CP002687
EnsemblPlants:AT4G28820EnsemblPlants:AT4G28820.1entrez:829003ExpressionAtlas:Q1RKP4
GeneID:829003Gramene:AT4G28820.1hmmpanther:PTHR13483hmmpanther:PTHR13483:SF8
InterPro:IPR007529OMA:HKETPCAPfam:PF04438Pfscan:PS51083
PhylomeDB:Q1RKP4PROSITE:PS51083Proteomes:UP000006548RefSeq:NP_194611.2
SMR:Q1RKP4STRING:3702.AT4G28820.1SUPFAM:SSF144232TAIR:AT4G28820
UniGene:At.50377UniProt:Q1RKP4
Coordinates (TAIR10) chr4:-:14230815..14232287
Molecular Weight (calculated) 19153.70 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.55
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MCPRATQTCE ICEKVVSKYK CPSCLVPYCS LGCFKIHKET PCAKPSDPSS TEEKPAASPA KEVPVKRPEE ANDVVEKTQQ KASAASPAKE IPVARPIIVE
101: EEKYILEKTQ FEAIASSSEI REALKDEPLQ KLIYSIDSSS NPLQELDEAM GIEAFREFTD KILSNISKSN DEQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)