AT4G28690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: RPM1 interacting protein 13 (TAIR:AT2G20310.1); Has 455 Blast hits to 438 proteins in 127 species: Archae - 0; Bacteria - 18; Metazoa - 148; Fungi - 91; Plants - 136; Viruses - 3; Other Eukaryotes - 59 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:14159093..14160876 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 49235.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.87 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||
| Length | 448 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSMNHIVVD VSSDEDDDKP VDYSYLLDRI LGVSDEKKPI KGTVLLNPTV ENEDDDDDCV ILDFDPTAKE TVIETCETDG VLVVGQKGEV ACRDFPHPRH 101: ACAKYPFKST LHQTFCEMCH CYVCDTRAPC TYWFSGGISN TDHCHANDKE KTWNDQRECI RTGNMLPRPV SKPASAKLQF KRAPRRPSVY VPVPLLQNSS 201: GTNLGIRACS KSTKVAIHPK TYTRPGHRTE QSRTVQQNPG SQPHAMQSLP NHKSGSNNGN PSPQVVPSNP YVLTRRPSNG VYPPENSVQN ISQGLQPTYY 301: APLMASQGSQ PTRFAPPVAS QGSQPTCCAP PVASQGSQPT RYAPPVASQG NAQRIVTGSI STVPVSQSKE AKQFSRNMYS ANVQTNAVPT MTPNPPAVQQ 401: QQQQQSGRSN DRVLSEFEDW LLDDSTLPCP SSVQDNTLKI DFETFLND |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)