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AT4G27870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Vacuolar iron transporter (VIT) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vacuolar iron transporter (VIT) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); BEST Arabidopsis thaliana protein match is: vacuolar iron transporter (VIT) family protein (TAIR:AT4G27860.2); Has 285 Blast hits to 248 proteins in 70 species: Archae - 2; Bacteria - 30; Metazoa - 59; Fungi - 10; Plants - 112; Viruses - 4; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
BioGrid:14187eggNOG:ENOG410IXJ8eggNOG:ENOG41129NDEMBL:AL078579
EMBL:AL161571EMBL:AY056404EMBL:AY094391EMBL:BT002626
EMBL:CP002687EnsemblPlants:AT4G27870EnsemblPlants:AT4G27870.1entrez:828900
GeneID:828900GO:GO:0005789GO:GO:0016020GO:GO:0016021
Gramene:AT4G27870.1hmmpanther:PTHR31851hmmpanther:PTHR31851:SF16HOGENOM:HOG000148678
InParanoid:Q8LPT3IntAct:Q8LPT3KEGG:ath:AT4G27870OMA:NCDSCIT
PaxDb:Q8LPT3Pfam:Q8LPT3PhylomeDB:Q8LPT3PIR:T09026
PRIDE:Q8LPT3PRO:PR:Q8LPT3Proteomes:UP000006548RefSeq:NP_567789.2
SwissPalm:Q8LPT3TAIR:AT4G27870TMHMM:TMhelixUniGene:At.26328
UniProt:Q8LPT3
Coordinates (TAIR10) chr4:+:13878983..13882679
Molecular Weight (calculated) 82555.20 Da
IEP (calculated) 4.42
GRAVY (calculated) -0.44
Length 761 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSAAELTEP TTGTEKLHQP IEVEEDDEQI VDLERKTFRH GKGHDTSVDS STITNTSSSS SSSFSGDGGT EETPDFHSNG DGEHTDLVNL EVPELETEIV
101: FHQEHDDGKN CIVFFDGEQG SESAGAIPDA HEESQTADLN GEQTQLEPEN GSTSEDNERS REIEEVLDGD VSKDLDAVDP LAGEVIEEEV DFEDVEYHDV
201: ENMMDKQETH DLYCPNCDSC ITKKVILKRR KRKIRRHELG DSKRPHLTEP LFHSEDNLPS LDGGENSANE SFVFKCLSCF TIFIPKGVSS KPIPPRQGVE
301: GLKIQPNPQV EATGDSNWFS SIFGLNKKES AIQQGGASSS VLEANPPPRE SIVPVVNPSR GNLSPMRKDT TGSAVVQPDA ATSIQVAKSN DTSEIVNNGA
401: IVGDGQKFLA PMVEEQTQQK IDNDDSSTAD GNHTSDKGRL SPIQPSHGMS ILNTVTNGPD GLKVETTIHE EGAPLLFEGK DTPDTSTADF GLTKVTGVMD
501: TGDRGVITGP ANPEIDISAG NLLEEGSLRE PLMRRVVVQG RKLEILKSIV YGGLLEAITS LGVISSAAGS GASMLNILVL GLANLLGGLI LIIHNLQELR
601: EEEPIRTTTE DNQTNGREEE EGRYKRLLGR RENFTLHATV AILSFIITGI LPPVVYYFSF SEKHNKDYKV ASVFGASLFC IVLLAIAKAH VRYPRGSYLK
701: SILYYGSIAV SVSGISYVVG NFLEQLLEKH GWSDGSETPV GQMMLSSLMG RKAGFGYSSS Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)