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AT1G31830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Amino acid permease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Amino acid permease family protein; FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: Amino acid permease family protein (TAIR:AT1G31820.1); Has 27773 Blast hits to 27763 proteins in 2221 species: Archae - 390; Bacteria - 23862; Metazoa - 1016; Fungi - 1188; Plants - 517; Viruses - 0; Other Eukaryotes - 800 (source: NCBI BLink).
Protein Annotations
BioGrid:25307eggNOG:COG0531eggNOG:KOG1287EMBL:AC079041
EMBL:AK317082EMBL:BT030375EMBL:CP002684EnsemblPlants:AT1G31830
EnsemblPlants:AT1G31830.1entrez:840073GeneID:840073Genevisible:Q9C6S5
GO:GO:0005886GO:GO:0015171GO:GO:0015203GO:GO:0015293
GO:GO:0015297GO:GO:0015846GO:GO:0016021GO:GO:1902047
hmmpanther:PTHR11785hmmpanther:PTHR11785:SF355HOGENOM:HOG000239391InParanoid:Q9C6S5
InterPro:IPR002293KEGG:ath:AT1G31830OMA:VFRWIGEPANTHER:PTHR11785
PaxDb:Q9C6S5Pfam:PF13520Pfam:Q9C6S5PhylomeDB:Q9C6S5
PIR:D86442PIRSF:PIRSF006060PRIDE:Q9C6S5PRO:PR:Q9C6S5
ProteinModelPortal:Q9C6S5Proteomes:UP000006548RefSeq:NP_174466.1RefSeq:NP_973947.1
SMR:Q9C6S5STRING:3702.AT1G31830.1TAIR:AT1G31830TMHMM:TMhelix
UniGene:At.25026UniProt:Q9C6S5
Coordinates (TAIR10) chr1:-:11418875..11420362
Molecular Weight (calculated) 54830.70 Da
IEP (calculated) 6.16
GRAVY (calculated) 0.49
Length 495 amino acids
Sequence (TAIR10)
(BLAST)
001: MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT
101: AEMGTMYPEN GGYVVWVSSA LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN YRGLTIVGWV AVLMGVFSIL
201: PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV
301: AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV
401: RMRMKHPAAS RPYKIPIGTT GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP DLQQQTREYE ETLIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)