AT3G60130.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : beta glucosidase 16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
beta glucosidase 16 (BGLU16); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 13 (TAIR:AT5G44640.1); Has 11475 Blast hits to 11098 proteins in 1475 species: Archae - 144; Bacteria - 7936; Metazoa - 718; Fungi - 200; Plants - 1457; Viruses - 0; Other Eukaryotes - 1020 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:22210343..22213650 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 58045.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 514 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MRGKFLSLLL LITLACIGVS AKKHSTRPRL RRNDFPQDFV FGSATSAYQC EGAAHEDGRG PSIWDSFSEK FPEKIMDGSN GSIADDSYNL YKEDVNLLHQ 101: IGFDAYRFSI SWSRILPRGT LKGGINQAGI EYYNNLINQL ISKGVKPFVT LFHWDLPDAL ENAYGGLLGD EFVNDFRDYA ELCFQKFGDR VKQWTTLNEP 201: YTMVHEGYIT GQKAPGRCSN FYKPDCLGGD AATEPYIVGH NLLLAHGVAV KVYREKYQAT QKGEIGIALN TAWHYPYSDS YADRLAATRA TAFTFDYFME 301: PIVYGRYPIE MVSHVKDGRL PTFTPEESEM LKGSYDFIGV NYYSSLYAKD VPCATENITM TTDSCVSLVG ERNGVPIGPA AGSDWLLIYP KGIRDLLLHA 401: KFRYNDPVLY ITENGVDEAN IGKIFLNDDL RIDYYAHHLK MVSDAISIGV NVKGYFAWSL MDNFEWSEGY TVRFGLVFVD FEDGRKRYLK KSAKWFRRLL 501: KGAHGGTNEQ VAVI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)