AT4G23730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose mutarotase-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose mutarotase-like superfamily protein; FUNCTIONS IN: isomerase activity, carbohydrate binding, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT3G61610.1); Has 2244 Blast hits to 2241 proteins in 942 species: Archae - 0; Bacteria - 1605; Metazoa - 39; Fungi - 135; Plants - 255; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12362955..12364792 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34630.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.25 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 306 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPSSGTGPE KRPTVDLVKD RNGTDQILLQ NPRGASVKIS LHGGQVLSWK TDKGDELLFN STKANLKPPH PVRGGIPICF PQFGTRGSLE QHGFARNKMW 101: LVENNPPALP SFDSTGKAYV DLVLKSSDED TMRIWPYSFE FHLRVSLALD GNLTLISRVR NINSKPFSFS IAYHTYFSIS DISEVRLEGL ETLDYLDNMH 201: DRERFTEQGD ALTFESEIDR VYLNSKDVVA IFDHERKRTF LIKKEGLPDV VVWNPWEKKA RALTDLGDDE YRHMLCVDGA AIEKPITLKP GEEWTGKLHL 301: SLVLST |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)