AT4G23250.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : kinases;protein kinases | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
EMBRYO DEFECTIVE 1290 (EMB1290); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (TAIR:AT4G23260.1); Has 121653 Blast hits to 119053 proteins in 4422 species: Archae - 98; Bacteria - 13672; Metazoa - 43987; Fungi - 10320; Plants - 35330; Viruses - 426; Other Eukaryotes - 17820 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:12162004..12167026 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 115778.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.52 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1035 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MAKTSCEIIL CFFFFILSFR VISVSAQQTC DNTAGSFKPN STYDNNRRLL LSTFASNVTA QNGYFNGSFG LGTDRVYAMG MCAPGAEPDV CSNCIKNTAE 0101: GLLQICLNQT DGFSWSGEET LCLVRYSNKS FSGLLGLEPS NDFFNVNEIR KEDQKEFDSV FDELMFRTIQ GASSSVRNNS NSLSLSGKYY AKDVAPEPVY 0201: GNISVVMQCT PDVSSKDCNL CLERSLDFYK KWYNGKRGTI ILRPSCFFRW ELYTFFGAFD SINARHPPPP PRPLSPPPLK TPSVTNQTNI TKKNDSRISG 0301: GTIAAIVVVV VVTIILIVVG LVICKRRKQK QEIELPTESV QFDLKTIEAA TGNFSEHNKL GAGGFGEVYK GMLLNGTEIA VKRLSKTSGQ GEIEFKNEVV 0401: VVAKLQHINL VRLLGFSLQG EEKLLVYEFV PNKSLDYFLF DPNKRNQLDW TVRRNIIGGI TRGILYLHQD SRLKIIHRDL KASNILLDAD MNPKIADFGM 0501: ARIFGVDQTV ANTARVVGTF GYMSPEYVTH GQFSMKSDVY SFGVLILEII SGKKNSSFYQ MDGLVNNLVT YVWKLWENKT MHELIDPFIK EDCKSDEVIR 0601: YVHIGLLCVQ ENPADRPTMS TIHQVLTTSS ITLPVPQPPG FFFRNGPGSN PSSQGMVPGQ SSSKSFTSSV DEATITQRRR KSYREIDIQY SPHLSSNNLM 0701: LTSNILNLHV PQPSRTDGLD FSISSAQKCG KTGLFKPNDK YDINRHLLLS SLASNVSARG GFYNASIGQG PDRLYASGTC IQGSEPELCS ACIDSAFIRV 0801: IKKCHNQTEA LDWSSFNEEY PCMIRYSNRS FFGLLEMTPF FKNYNATDFQ VNLTEFYQKW EALMLGVIAD AISSPNPKFY GAGTGKIGIQ TVYAFVLCSK 0901: DISPWNCSRC LRGNVDNYKL SCSGKPRGHS FSPSCYMRWD LYQFYGFIEY RASPTLPREK GRISELSDDG GKISTRNILG ITVALAFFIT VLLVLGYALS 1001: RRRKAYQEFA TERRSMTTYG TAPPDDGKRL YSYLH |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)