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AT4G23250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : kinases;protein kinases
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 1290 (EMB1290); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (TAIR:AT4G23260.1); Has 121653 Blast hits to 119053 proteins in 4422 species: Archae - 98; Bacteria - 13672; Metazoa - 43987; Fungi - 10320; Plants - 35330; Viruses - 426; Other Eukaryotes - 17820 (source: NCBI BLink).
Protein Annotations
EC:2.7.11.-eggNOG:COG0515eggNOG:ENOG410IH0TEMBL:AF084037
EMBL:AL022347EMBL:AL161559EMBL:AY140033EMBL:CP002687
EnsemblPlants:AT4G23250EnsemblPlants:AT4G23250.1entrez:828424ExpressionAtlas:Q8L710
Gene3D:2.60.120.200GeneID:828424Genevisible:Q8L710GO:GO:0004674
GO:GO:0005524GO:GO:0016021Gramene:AT4G23250.1hmmpanther:PTHR27002
HOGENOM:HOG000116550InParanoid:Q8L710InterPro:IPR000719InterPro:IPR001245
InterPro:IPR002902InterPro:IPR008271InterPro:IPR011009InterPro:IPR013320
InterPro:IPR017441iPTMnet:Q8L710KEGG:ath:AT4G23250PaxDb:Q8L710
Pfam:PF01657Pfam:PF07714Pfam:Q8L710Pfscan:PS50011
Pfscan:PS51473PIR:T04842PRIDE:Q8L710PRO:PR:Q8L710
PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011PROSITE:PS51473
ProteinModelPortal:Q8L710Proteomes:UP000006548RefSeq:NP_194056.2scanprosite:PS00107
scanprosite:PS00108SMART:SM00220SMR:Q8L710STRING:3702.AT4G23250.1
SUPFAM:SSF56112SwissPalm:Q8L710TAIR:AT4G23250tair10-symbols:CRK17
tair10-symbols:DUF26-21tair10-symbols:EMB1290tair10-symbols:RKC1TMHMM:TMhelix
UniGene:At.32454UniProt:Q38991UniProt:Q8L710
Coordinates (TAIR10) chr4:-:12162004..12167026
Molecular Weight (calculated) 115778.00 Da
IEP (calculated) 8.52
GRAVY (calculated) -0.22
Length 1035 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAKTSCEIIL CFFFFILSFR VISVSAQQTC DNTAGSFKPN STYDNNRRLL LSTFASNVTA QNGYFNGSFG LGTDRVYAMG MCAPGAEPDV CSNCIKNTAE
0101: GLLQICLNQT DGFSWSGEET LCLVRYSNKS FSGLLGLEPS NDFFNVNEIR KEDQKEFDSV FDELMFRTIQ GASSSVRNNS NSLSLSGKYY AKDVAPEPVY
0201: GNISVVMQCT PDVSSKDCNL CLERSLDFYK KWYNGKRGTI ILRPSCFFRW ELYTFFGAFD SINARHPPPP PRPLSPPPLK TPSVTNQTNI TKKNDSRISG
0301: GTIAAIVVVV VVTIILIVVG LVICKRRKQK QEIELPTESV QFDLKTIEAA TGNFSEHNKL GAGGFGEVYK GMLLNGTEIA VKRLSKTSGQ GEIEFKNEVV
0401: VVAKLQHINL VRLLGFSLQG EEKLLVYEFV PNKSLDYFLF DPNKRNQLDW TVRRNIIGGI TRGILYLHQD SRLKIIHRDL KASNILLDAD MNPKIADFGM
0501: ARIFGVDQTV ANTARVVGTF GYMSPEYVTH GQFSMKSDVY SFGVLILEII SGKKNSSFYQ MDGLVNNLVT YVWKLWENKT MHELIDPFIK EDCKSDEVIR
0601: YVHIGLLCVQ ENPADRPTMS TIHQVLTTSS ITLPVPQPPG FFFRNGPGSN PSSQGMVPGQ SSSKSFTSSV DEATITQRRR KSYREIDIQY SPHLSSNNLM
0701: LTSNILNLHV PQPSRTDGLD FSISSAQKCG KTGLFKPNDK YDINRHLLLS SLASNVSARG GFYNASIGQG PDRLYASGTC IQGSEPELCS ACIDSAFIRV
0801: IKKCHNQTEA LDWSSFNEEY PCMIRYSNRS FFGLLEMTPF FKNYNATDFQ VNLTEFYQKW EALMLGVIAD AISSPNPKFY GAGTGKIGIQ TVYAFVLCSK
0901: DISPWNCSRC LRGNVDNYKL SCSGKPRGHS FSPSCYMRWD LYQFYGFIEY RASPTLPREK GRISELSDDG GKISTRNILG ITVALAFFIT VLLVLGYALS
1001: RRRKAYQEFA TERRSMTTYG TAPPDDGKRL YSYLH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)