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AT4G20860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24030099 (2013): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD-binding Berberine family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: response to cyclopentenone; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT5G44360.1); Has 5055 Blast hits to 4866 proteins in 819 species: Archae - 58; Bacteria - 2286; Metazoa - 6; Fungi - 1739; Plants - 670; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G20860-MONOMEReggNOG:COG0277eggNOG:ENOG410IE3MEMBL:AL080282
EMBL:AL161553EMBL:CP002687EnsemblPlants:AT4G20860EnsemblPlants:AT4G20860.1
entrez:827834Gene3D:3.30.43.10Gene3D:3.30.465.10GeneID:827834
GO:GO:0005829GO:GO:0016614GO:GO:0050660Gramene:AT4G20860.1
hmmpanther:PTHR32448hmmpanther:PTHR32448:SF21InterPro:IPR006093InterPro:IPR006094
InterPro:IPR012951InterPro:IPR016166InterPro:IPR016167InterPro:IPR016169
KEGG:ath:AT4G20860OMA:NEVEEMNPfam:PF01565Pfam:PF08031
Pfscan:PS51387PhylomeDB:Q9SUC6PIR:T10628PROSITE:PS00862
PROSITE:PS51387Proteomes:UP000006548RefSeq:NP_193818.1scanprosite:PS00862
SMR:Q9SUC6STRING:3702.AT4G20860.1SUPFAM:SSF56176TAIR:AT4G20860
UniGene:At.3571UniGene:At.3572UniProt:Q9SUC6
Coordinates (TAIR10) chr4:+:11172726..11174318
Molecular Weight (calculated) 60412.90 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.28
Length 530 amino acids
Sequence (TAIR10)
(BLAST)
001: MRELFMYLFL LFLVLCVKSV YSTPTREQFQ NCLSTKQFNS TLKNPINLTT HTLDSRVHTD FSESSSPNSS FLNLNFTSLK PILIVKPKSE SEIKQSILCS
101: RKLGVQVRTM SGGHDYEGLS YLSLSPFIIV DLVNLRSISI NLTDETAWIQ SGATLGEVYY KIAKTSKIHA FAAGICPSVG VGGHISGGGF GTIMRKYGLA
201: SDNVVDARLM DVNGKTLDRK TMGEDLFWAL RGGGAASFGV VLSWKVKLAR VPEKVTCFIS QHPMGPSMNK LVHRWQSIGS ELDEDLFIRV IIDNSLEGNQ
301: RKVKSTFQTL FLGGIDRLIP LMNQKFPELG LRSQDCSEMS WIESIMFFNW RSGQPLEILL NRDLRFEDQY FKAKSDYVQK PVPENVFEEV TKRFLEQDTP
401: LMIFEPLGGK ISKISETESP YPHRRGNLYN IQYMVKWKVN EVEEMNKHVR WMRSLHDYMT PYVSKSPRGA YLNYRDLDLG STKGINTSFE DARKWGETYF
501: KGNFKRLGLV KGKIDPTNFF RNEQSIPPLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)