AT4G20320.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.983 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : CTP synthase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
CTP synthase family protein; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT1G30820.1); Has 10893 Blast hits to 10859 proteins in 2946 species: Archae - 237; Bacteria - 5540; Metazoa - 255; Fungi - 235; Plants - 169; Viruses - 0; Other Eukaryotes - 4457 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:10974980..10978998 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 65936.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.68 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 597 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MKYVVVSGGV VSGLGKGVTA SSIGLILKSC GFRVTAIKID PYLNIDAGTM SPIEHGEVYV LDDGGEVDLD LGNYERFMDI KLTSENNITT GKVYKHVLEK 101: ERRGDYLGKT VQVVPHITDA IQKWIERAAR IPVDGQSGPA DVCVIELGGT IGDIESMPFI EALGQFSYRV GTDNFCLIHV SLVPVLNVVG EQKTKPTQHS 201: VRDLRGLGLS PNILACRSTK PLEDNVKAKL SQFCHVPMEN VVTLYDCPNI WHIPLLLKEQ KAHEAIFRVL NLEGVAKEPA LEEWSLMAKM TDKLHVPVRI 301: AVVGKYTELL DSYLSIHKAL LHASVARRKK LIIDWISASD LEQGAKKENP DAYKAAWKLL KGADGVLVPG GFGSRGVEGK MLAAKYAREN RIPYLGICLG 401: MQLAVIEYAR TILGLADANS TELDPNTKNP CVIFMPEGSK THMGGTMRLG SRRTYFHSKD SKSARLYGNK SFVDERHRHR YEVNPAMVPR FESSGLTFTG 501: KDETGQRMEI IELPNHPFYV GAQFHPEYKS RPGKPSPLFL GLIGAASGEL DTVLLQSYQE TVVPRSLPNG KLERVYWKGA AKKPVSVVYS LCDRVYS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)