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AT4G20320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.983
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CTP synthase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CTP synthase family protein; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT1G30820.1); Has 10893 Blast hits to 10859 proteins in 2946 species: Archae - 237; Bacteria - 5540; Metazoa - 255; Fungi - 235; Plants - 169; Viruses - 0; Other Eukaryotes - 4457 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G20320-MONOMERBioCyc:ARA:GQT-2076-MONOMEREC:6.3.4.2eggNOG:COG0504
eggNOG:KOG2387EMBL:AK228162EMBL:CP002687EnsemblPlants:AT4G20320
EnsemblPlants:AT4G20320.1EnsemblPlants:AT4G20320.2entrez:827780Gene3D:3.40.50.300
Gene3D:3.40.50.880GeneID:827780GO:GO:0003883GO:GO:0005524
GO:GO:0006541GO:GO:0044210Gramene:AT4G20320.1Gramene:AT4G20320.2
gramene_pathway:6.3.4.2gramene_pathway:PWY-5687HAMAP:MF_01227hmmpanther:PTHR11550
HOGENOM:HOG000077514InterPro:IPR004468InterPro:IPR017456InterPro:IPR017926
InterPro:IPR027417InterPro:IPR029062KEGG:00240+6.3.4.2KEGG:ath:AT4G20320
KO:K01937MEROPS:C26.964OMA:QGAKKENPANTHER:PTHR11550
Pfam:PF00117Pfam:PF06418Pfscan:PS51273PhylomeDB:Q0WRY1
PROSITE:PS51273Proteomes:UP000006548Reactome:R-ATH-499943RefSeq:NP_001078411.1
RefSeq:NP_193765.3SMR:Q0WRY1STRING:3702.AT4G20320.1SUPFAM:SSF52317
SUPFAM:SSF52540TAIR:AT4G20320TIGRfam:TIGR00337TIGRFAMs:TIGR00337
UniGene:At.44064UniPathway:UPA00159UniProt:Q0WRY1
Coordinates (TAIR10) chr4:+:10974980..10978998
Molecular Weight (calculated) 65936.90 Da
IEP (calculated) 8.68
GRAVY (calculated) -0.18
Length 597 amino acids
Sequence (TAIR10)
(BLAST)
001: MKYVVVSGGV VSGLGKGVTA SSIGLILKSC GFRVTAIKID PYLNIDAGTM SPIEHGEVYV LDDGGEVDLD LGNYERFMDI KLTSENNITT GKVYKHVLEK
101: ERRGDYLGKT VQVVPHITDA IQKWIERAAR IPVDGQSGPA DVCVIELGGT IGDIESMPFI EALGQFSYRV GTDNFCLIHV SLVPVLNVVG EQKTKPTQHS
201: VRDLRGLGLS PNILACRSTK PLEDNVKAKL SQFCHVPMEN VVTLYDCPNI WHIPLLLKEQ KAHEAIFRVL NLEGVAKEPA LEEWSLMAKM TDKLHVPVRI
301: AVVGKYTELL DSYLSIHKAL LHASVARRKK LIIDWISASD LEQGAKKENP DAYKAAWKLL KGADGVLVPG GFGSRGVEGK MLAAKYAREN RIPYLGICLG
401: MQLAVIEYAR TILGLADANS TELDPNTKNP CVIFMPEGSK THMGGTMRLG SRRTYFHSKD SKSARLYGNK SFVDERHRHR YEVNPAMVPR FESSGLTFTG
501: KDETGQRMEI IELPNHPFYV GAQFHPEYKS RPGKPSPLFL GLIGAASGEL DTVLLQSYQE TVVPRSLPNG KLERVYWKGA AKKPVSVVYS LCDRVYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)