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AT3G10190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.932
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G41410.1); Has 18786 Blast hits to 12756 proteins in 1414 species: Archae - 1; Bacteria - 149; Metazoa - 7817; Fungi - 3299; Plants - 4581; Viruses - 0; Other Eukaryotes - 2939 (source: NCBI BLink).
Protein Annotations
BioGrid:5515DNASU:820181eggNOG:COG5126eggNOG:KOG0027
EMBL:AC009400EMBL:AK228130EMBL:BT003114EMBL:CP002686
EnsemblPlants:AT3G10190EnsemblPlants:AT3G10190.1entrez:820181Gene3D:1.10.238.10
GeneID:820181Genevisible:Q9SS31GO:GO:0005509GO:GO:0005886
GO:GO:0050832Gramene:AT3G10190.1hmmpanther:PTHR10891hmmpanther:PTHR10891:SF573
HOGENOM:HOG000233018InParanoid:Q9SS31InterPro:IPR002048InterPro:IPR011992
InterPro:IPR018247iPTMnet:Q9SS31KEGG:ath:AT3G10190KO:K13448
OMA:MIGDERCPaxDb:Q9SS31Pfam:PF13499Pfam:Q9SS31
Pfscan:PS50222PhylomeDB:Q9SS31PRIDE:Q9SS31PRO:PR:Q9SS31
PROSITE:PS00018PROSITE:PS50222ProteinModelPortal:Q9SS31Proteomes:UP000006548
RefSeq:NP_187630.1scanprosite:PS00018SMART:SM00054SMR:Q9SS31
STRING:3702.AT3G10190.1SUPFAM:SSF47473TAIR:AT3G10190UniGene:At.39968
UniProt:Q9SS31
Coordinates (TAIR10) chr3:+:3155309..3155938
Molecular Weight (calculated) 22998.90 Da
IEP (calculated) 4.23
GRAVY (calculated) -0.38
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLAKLIPKR FFIRSKDRST VSKSPTAFSF GSASSSSGQD CKNSGGDGGG GSVTPTSILP EVPSPYSYVE ILQAFKLIDR DNDGAVSRHD LESLLSRLGP
101: DPLTEEEINV MLKEVDCDGD GTIRLEELAS RVVSLDPARD STELKETFEF FDADRDGLIS ADELLRVFST IGDERCTLDD CKRMIADVDE DGDGFVCFTE
201: FSRMMDLQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)