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AT4G19810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:21109274 (2011): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Glycosyl hydrolase family protein with chitinase insertion domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family protein with chitinase insertion domain; FUNCTIONS IN: cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein with chitinase insertion domain (TAIR:AT4G19820.1); Has 6461 Blast hits to 6286 proteins in 1137 species: Archae - 29; Bacteria - 2687; Metazoa - 1798; Fungi - 1311; Plants - 165; Viruses - 109; Other Eukaryotes - 362 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G19810-MONOMERBioCyc:MetaCyc:AT4G19810-MONOMERCAZy:GH18eggNOG:COG3325
eggNOG:KOG2806EMBL:AL024486EMBL:AL161551EMBL:BT029539
EMBL:CP002687EnsemblPlants:AT4G19810EnsemblPlants:AT4G19810.1entrez:827725
Gene3D:3.10.50.10Gene3D:3.20.20.80GeneID:827725GO:GO:0005576
GO:GO:0005618GO:GO:0005975GO:GO:0006032GO:GO:0008061
GO:GO:0008843GO:GO:0009651GO:GO:0009737GO:GO:0009753
GO:GO:0035885Gramene:AT4G19810.1hmmpanther:PTHR11177hmmpanther:PTHR11177:SF219
HOGENOM:HOG000240738IntAct:O81862InterPro:IPR001223InterPro:IPR011583
InterPro:IPR013781InterPro:IPR017853InterPro:IPR029070KEGG:ath:AT4G19810
KO:K01183OMA:GTRSWIQPDB:3AQUPDBsum:3AQU
Pfam:PF00704PhylomeDB:O81862PIR:T04762Proteomes:UP000006548
RefSeq:NP_193716.1SMART:SM00636SMR:O81862STRING:3702.AT4G19810.1
SUPFAM:SSF51445SUPFAM:SSF54556TAIR:AT4G19810UniGene:At.70158
UniProt:O81862
Coordinates (TAIR10) chr4:-:10764151..10765753
Molecular Weight (calculated) 41130.10 Da
IEP (calculated) 9.03
GRAVY (calculated) -0.10
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTKLISLI VSITFFLTLQ CSMAQTVVKA SYWFPASEFP VTDIDSSLFT HLFCAFADLN SQTNQVTVSS ANQPKFSTFT QTVQRRNPSV KTLLSIGGGI
101: ADKTAYASMA SNPTSRKSFI DSSIRVARSY GFHGLDLDWE YPSSATEMTN FGTLLREWRS AVVAEASSSG KPRLLLAAAV FYSNNYYSVL YPVSAVASSL
201: DWVNLMAYDF YGPGWSRVTG PPAALFDPSN AGPSGDAGTR SWIQAGLPAK KAVLGFPYYG YAWRLTNANS HSYYAPTTGA AISPDGSIGY GQIRKFIVDN
301: GATTVYNSTV VGDYCYAGTN WIGYDDNQSI VTKVRYAKQR GLLGYFSWHV GADDNSGLSR AASQAWDATT ATTRTIQKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)