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AT2G15220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:18998720 (2009): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant basic secretory protein (BSP) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant basic secretory protein (BSP) family protein; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family, basic secretory protein (InterPro:IPR007541); BEST Arabidopsis thaliana protein match is: Plant basic secretory protein (BSP) family protein (TAIR:AT2G15130.1); Has 296 Blast hits to 296 proteins in 84 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 66; Plants - 170; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHPYeggNOG:ENOG4111I5HEMBL:AC006298EMBL:AF345341
EMBL:AY090375EMBL:CP002685EnsemblPlants:AT2G15220EnsemblPlants:AT2G15220.1
entrez:816011GeneID:816011Gramene:AT2G15220.1hmmpanther:PTHR33321
HOGENOM:HOG000243511InterPro:IPR007541KEGG:ath:AT2G15220OMA:STFIWNT
Pfam:PF04450PhylomeDB:Q9SKL6PIR:D84526Proteomes:UP000006548
RefSeq:NP_565369.1STRING:3702.AT2G15220.1TAIR:AT2G15220UniGene:At.13396
UniProt:Q9SKL6
Coordinates (TAIR10) chr2:+:6608689..6609366
Molecular Weight (calculated) 25165.60 Da
IEP (calculated) 8.83
GRAVY (calculated) -0.31
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MTFHKIFFVI SLMLVVSLVN AVDYSVVDNS GDSTGGRRFR GEIGGISYGT QTLRSATDFV WRLFQQTNPS DRKSVTKITL FMENGDGVAY NSANEIHFNV
101: GYLAGVSGDV KREFTGVVYH EVVHSWQWNG AGRAPGGLIE GIADYVRLKA GYAPSHWVGP GRGDRWDQGY DVTARFLDYC NGLRNGFVAE LNKKMRNGYS
201: DGFFVDLLGK DVNQLWREYK AKYGQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)