AT4G16830.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.901 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Hyaluronan / mRNA binding family | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 23191 Blast hits to 11934 proteins in 1060 species: Archae - 16; Bacteria - 7670; Metazoa - 7282; Fungi - 1721; Plants - 3144; Viruses - 315; Other Eukaryotes - 3043 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:+:9470621..9472308 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 37469.90 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.63 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -1.14 | ||||||||||||||||||||||||||||||||||||||||
Length | 355 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MATLNPFDLL DDDAEDPSQL AVAIEKIDKS KKSGQVSSLP AKSAPKLPSK PLPPAQAVRE ARSDAPRGGG GRGGFNRGRG GYNRDDGNNG YSGGYTKPSG 101: EGDVSKSSYE RRGGGGAPRG SFRGEGGGPG GGRRGGFSNE GGDGERPRRA FERRSGTGRG SDFKRDGSGR GNWGTPGEEI AAETEAVAGV ETEKDVGEKP 201: AVDDVAADAN KEDTVVEEKE PEDKEMTLDE YEKILEEKKK ALQSLTTSER KVDTKVFESM QQLSNKKSND EIFIKLGSDK DKRKDDKEEK AKKAVSINEF 301: LKPAEGGNYY RGGRGGRGRG GRGRGGVSSG ESGGYRNEAA PAIGDAAQFP SLGGK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)