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AT4G16830.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.901
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Hyaluronan / mRNA binding family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Hyaluronan / mRNA binding family; CONTAINS InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084), Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST Arabidopsis thaliana protein match is: Hyaluronan / mRNA binding family (TAIR:AT4G17520.1); Has 23191 Blast hits to 11934 proteins in 1060 species: Archae - 16; Bacteria - 7670; Metazoa - 7282; Fungi - 1721; Plants - 3144; Viruses - 315; Other Eukaryotes - 3043 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YBHReggNOG:KOG2945EMBL:AF110227EMBL:AL161545
EMBL:AY063896EMBL:AY096500EMBL:AY127018EMBL:BT000559
EMBL:CP002687EMBL:Z97342EnsemblPlants:AT4G16830EnsemblPlants:AT4G16830.1
entrez:827389ExpressionAtlas:O23523GeneID:827389GO:GO:0003729
GO:GO:0005634GO:GO:0005737GO:GO:0048471GO:GO:0071470
GO:GO:0071472Gramene:AT4G16830.1hmmpanther:PTHR12299hmmpanther:PTHR12299:SF24
HOGENOM:HOG000238039InterPro:IPR006861InterPro:IPR019084ncoils:Coil
OMA:QVASQNRPfam:PF04774Pfam:PF09598PhylomeDB:O23523
PIR:F71435Proteomes:UP000006548RefSeq:NP_193416.1SMART:SM01233
STRING:3702.AT4G16830.1TAIR:AT4G16830UniGene:At.24459UniProt:O23523
Coordinates (TAIR10) chr4:+:9470621..9472308
Molecular Weight (calculated) 37469.90 Da
IEP (calculated) 8.63
GRAVY (calculated) -1.14
Length 355 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLNPFDLL DDDAEDPSQL AVAIEKIDKS KKSGQVSSLP AKSAPKLPSK PLPPAQAVRE ARSDAPRGGG GRGGFNRGRG GYNRDDGNNG YSGGYTKPSG
101: EGDVSKSSYE RRGGGGAPRG SFRGEGGGPG GGRRGGFSNE GGDGERPRRA FERRSGTGRG SDFKRDGSGR GNWGTPGEEI AAETEAVAGV ETEKDVGEKP
201: AVDDVAADAN KEDTVVEEKE PEDKEMTLDE YEKILEEKKK ALQSLTTSER KVDTKVFESM QQLSNKKSND EIFIKLGSDK DKRKDDKEEK AKKAVSINEF
301: LKPAEGGNYY RGGRGGRGRG GRGRGGVSSG ESGGYRNEAA PAIGDAAQFP SLGGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)