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AT4G16740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : terpene synthase 03
Curator
Summary (TAIR10)
Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect <i>Plutella xylostella</i>. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.
Computational
Description (TAIR10)
terpene synthase 03 (TPS03); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 1726 Blast hits to 1699 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1722; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G16740-MONOMERBioCyc:ARA:GQT-1996-MONOMERBioCyc:MetaCyc:AT4G16740-MONOMERBRENDA:4.2.3.106
BRENDA:4.2.3.46BRENDA:4.2.3.B40EC:4.2.3.105EC:4.2.3.106
EC:4.2.3.46eggNOG:ENOG410II1FeggNOG:ENOG410YF98EMBL:AF180366
EMBL:AK118969EMBL:AL161544EMBL:AY085646EMBL:AY151086
EMBL:BT030340EMBL:CP002687EMBL:Z97341EnsemblPlants:AT4G16740
EnsemblPlants:AT4G16740.1entrez:827377Gene3D:1.10.600.10Gene3D:1.50.30.10
GeneID:827377Genevisible:A4FVP2GO:GO:0000287GO:GO:0005829
GO:GO:0008152GO:GO:0009570GO:GO:0009611GO:GO:0009625
GO:GO:0009753GO:GO:0010333GO:GO:0016106GO:GO:0034768
GO:GO:0050551GO:GO:0052578GO:GO:0080027gramene_pathway:4.2.3.-
gramene_pathway:PWY-3041gramene_pathway:PWY-5725hmmpanther:PTHR31225hmmpanther:PTHR31225:SF16
HOGENOM:HOG000232971InParanoid:A4FVP2InterPro:IPR001906InterPro:IPR005630
InterPro:IPR008930InterPro:IPR008949KEGG:ath:AT4G16740KO:K19968
ncoils:CoilOMA:YNSINEMPaxDb:A4FVP2Pfam:A4FVP2
Pfam:PF01397Pfam:PF03936PhylomeDB:A4FVP2PIR:G71434
PRIDE:A4FVP2PRO:PR:A4FVP2ProteinModelPortal:A4FVP2Proteomes:UP000006548
RefSeq:NP_001031651.1RefSeq:NP_567511.3SMR:A4FVP2STRING:3702.AT4G16740.1
SUPFAM:SSF48239SUPFAM:SSF48576TAIR:AT4G16740tair10-symbols:ATTPS03
tair10-symbols:TPS03UniGene:At.44857UniPathway:UPA00213UniProt:A4FVP2
Coordinates (TAIR10) chr4:+:9407856..9410877
Molecular Weight (calculated) 65756.90 Da
IEP (calculated) 7.66
GRAVY (calculated) -0.40
Length 565 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKRQAQRRF TRKTDSKTPS QPLVSRRSAN YQPSLWQHEY LLSLGNTYVK EDNVERVTLL KQEVSKMLNE TEGLLEQLEL IDTLQRLGVS YHFEQEIKKT
101: LTNVHVKNVR AHKNRIDRNR WGDLYATALE FRLLRQHGFS IAQDVFDGNI GVDLDDKDIK GILSLYEASY LSTRIDTKLK ESIYYTTKRL RKFVEVNKNE
201: TKSYTLRRMV IHALEMPYHR RVGRLEARWY IEVYGERHDM NPILLELAKL DFNFVQAIHQ DELKSLSSWW SKTGLTKHLD FVRDRITEGY FSSVGVMYEP
301: EFAYHRQMLT KVFMLITTID DIYDIYGTLE ELQLFTTIVE KWDVNRLEEL PNYMKLCFLC LVNEINQIGY FVLRDKGFNV IPYLKESWAD MCTTFLKEAK
401: WYKSGYKPNF EEYMQNGWIS SSVPTILLHL FCLLSDQTLD ILGSYNHSVV RSSATILRLA NDLATSSEEL ARGDTMKSVQ CHMHETGASE AESRAYIQGI
501: IGVAWDDLNM EKKSCRLHQG FLEAAANLGR VAQCVYQYGD GHGCPDKAKT VNHVRSLLVH PLPLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)