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AT5G28237.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.798
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pyridoxal-5'-phosphate-dependent enzyme family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pyridoxal-5'-phosphate-dependent enzyme family protein; FUNCTIONS IN: pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity; INVOLVED IN: tryptophan biosynthetic process, metabolic process, tryptophan metabolic process; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, beta chain (InterPro:IPR006654), Tryptophan synthase, beta chain, conserved site (InterPro:IPR006653), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: tryptophan synthase beta-subunit 2 (TAIR:AT4G27070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0133eggNOG:KOG1395EMBL:CP002688EnsemblPlants:AT5G28237
EnsemblPlants:AT5G28237.1entrez:2746023GeneID:2746023GO:GO:0004834
Gramene:AT5G28237.1gramene_pathway:4.2.1.20gramene_pathway:TRPSYN-PWYHAMAP:MF_00133
hmmpanther:PTHR10314hmmpanther:PTHR10314:SF123InParanoid:F4K727InterPro:IPR001926
InterPro:IPR006653InterPro:IPR006654InterPro:IPR023026KEGG:00260+4.2.1.20
KEGG:00400+4.2.1.20KEGG:ath:AT5G28237KO:K01696OMA:VGPHPCP
PaxDb:F4K727Pfam:PF00291PIRSF:PIRSF001413PRIDE:F4K727
PROSITE:PS00168ProteinModelPortal:F4K727Proteomes:UP000006548RefSeq:NP_974844.1
scanprosite:PS00168SMR:F4K727STRING:3702.AT5G28237.1SUPFAM:SSF53686
TAIR:AT5G28237TIGRfam:TIGR00263TIGRFAMs:TIGR00263UniGene:At.44247
unipathway:UPA00035UniProt:F4K727
Coordinates (TAIR10) chr5:-:10207477..10213542
Molecular Weight (calculated) 50647.70 Da
IEP (calculated) 7.04
GRAVY (calculated) -0.17
Length 465 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)