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AT3G45130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.982
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : lanosterol synthase 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
lanosterol synthase 1 (LAS1); CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Squalene cyclase (InterPro:IPR018333), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: cycloartenol synthase 1 (TAIR:AT2G07050.1); Has 2160 Blast hits to 1916 proteins in 566 species: Archae - 4; Bacteria - 1015; Metazoa - 82; Fungi - 243; Plants - 610; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G45130-MONOMERBRENDA:5.4.99.7EC:5.4.99.7eggNOG:COG1657
eggNOG:KOG0497EMBL:AB247155EMBL:AL138649EMBL:CP002686
EMBL:DQ508794EnsemblPlants:AT3G45130EnsemblPlants:AT3G45130.1entrez:823649
Gene3D:1.50.10.20GeneID:823649Genevisible:Q1G1A4GO:GO:0000250
Gramene:AT3G45130.1gramene_pathway:5.4.99.7gramene_pathway:PWY-6132hmmpanther:PTHR11764
HOGENOM:HOG000234317InParanoid:Q1G1A4InterPro:IPR002365InterPro:IPR008930
InterPro:IPR018333InterPro:IPR032696InterPro:IPR032697iPTMnet:Q1G1A4
KEGG:ath:AT3G45130KO:K01852OMA:STPDNGWPaxDb:Q1G1A4
Pfam:PF13243Pfam:PF13249Pfam:Q1G1A4PhylomeDB:Q1G1A4
PIR:T47453PRIDE:Q1G1A4PRO:PR:Q1G1A4PROSITE:PS01074
ProteinModelPortal:Q1G1A4Proteomes:UP000006548RefSeq:NP_190099.3scanprosite:PS01074
SMR:Q1G1A4STRING:3702.AT3G45130.1SUPFAM:SSF48239TAIR:AT3G45130
tair10-symbols:LAS1TIGRfam:TIGR01787TIGRFAMs:TIGR01787UniGene:At.36069
UniProt:Q1G1A4
Coordinates (TAIR10) chr3:-:16512552..16517522
Molecular Weight (calculated) 86522.40 Da
IEP (calculated) 6.97
GRAVY (calculated) -0.32
Length 756 amino acids
Sequence (TAIR10)
(BLAST)
001: MWRLKLSEGD EESVNQHVGR QFWEYDNQFG TSEERHHINH LRSNFTLNRF SSKHSSDLLY RFQCWKEKGK GMERLPQVKV KEGEERLINE EVVNVTLRRS
101: LRFYSILQSQ DGFWPGDYGG PLFLLPALVI GLYVTEVLDG TLTAQHQIEI RRYLYNHQNK DGGWGLHVEG NSTMFCTVLS YVALRLMGEE LDGGDGAMES
201: ARSWIHHHGG ATFIPSWGKF WLSVLGAYEW SGNNPLPPEL WLLPYSLPFH PGRMWCHCRM VYLPMSYLYG RRFVCRTNGT ILSLRRELYT IPYHHIDWDT
301: ARNQCAKEDL YYPHPKIQDV LWSCLNKFGE PLLERWPLNN LRNHALQTVM QHIHYEDQNS HYICIGPVNK VLNMLCCWVE SSNSEAFKSH LSRIKDYLWV
401: AEDGMKMQGY NGSQLWDVTL AVQAILATNL VDDYGLMLKK AHNYIKNTQI RKDTSGDPGL WYRHPCKGGW GFSTGDNPWP VSDCTAEALK AALLLSQMPV
501: NLVGEPMPEE HLVDAVNFIL SLQNKNGGFA SYELTRSYPE LEVINPSETF GDIIIDYQYV ECTSAAIQGL VLFTTLNSSY KRKEIVGSIN KAVEFIEKTQ
601: LPDGSWYGSW GVCFTYATWF GIKGMLASGK TYESSLCIRK ACGFLLSKQL CCGGWGESYL SCQNKVYTNL PGNKSHIVNT SWALLALIEA GQASRDPMPL
701: HRGAKSLINS QMEDGDYPQQ EILGVFNRNC MISYSAYRNI FPIWALGEYR KLMLSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)