AT4G27480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.660 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process, N-terminal protein myristoylation; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT3G15350.2); Has 955 Blast hits to 954 proteins in 119 species: Archae - 0; Bacteria - 44; Metazoa - 555; Fungi - 0; Plants - 318; Viruses - 14; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:13736835..13738317 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47814.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.64 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||
| Length | 421 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSNSEKRW IFPLAMASLM FIFLIAASFN MGLLSSVRSI NSLIFSYNLS TTNETRVEFA ESKINQSSHP PPVQPSLPRF GYLVSGSRGD LESLWRVLRT 101: LYHPRNQYVV HLDLESPAEE RLELAKRVSQ DPVFSDVGNV HMITKANLVT YRGPTMVANT LHACAILLKQ SKEWDWFINL SASDYPLVTQ DDLIDTFSGL 201: DRNLNFIDHS SKLGWKEEKR AKPLIIDPGL YSTKKSDVFW VTPRRTMPTA FKLFTGSAWM VLSRSFVEYC IWGWDNLPRT LLMYYTNFLS TPEGYFHTVI 301: CNAPEYSSTV LNHDLHFISW DRPPKQHPRA LTINDTERMI ASGSAFSRKF RHNDPALDKI DKELLGRGNG NFTPGGWCAG EPKCSRVGDP SKIKPGPGAN 401: RLRVLVSRLV LTSKLTQRQC R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)