AT1G25500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.506 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plasma-membrane choline transporter family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); BEST Arabidopsis thaliana protein match is: Plasma-membrane choline transporter family protein (TAIR:AT5G13760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:8955595..8957793 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48289.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.16 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.60 | ||||||||||||||||||||||||||||
| Length | 432 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDSTNSVSP SSDYASISSG DQSLQRSRRS GDGNRAVVRE SRHWHDVFWS AIFVIHLICL GFVLAVLGLN RFRISDRLNI DRYTQGFLEN HKGLTEDYWP 101: LYAVAGGIGV FISWVWSLLL GSYANEMMKV SVHILTTYLA VVSVLCFWCR LFFWGGAFAV GSLLQFLYVI SVIDRLPFTM LVLRKALKLV WGLPKVIMVA 201: HAFTVVMLLW MSLWSFGAAG VVASSMGDEG RWWLLVVLSV SLFWTGAVLC NTVHVIVSGM VFHVLFHCGQ EESSSLPPSS LVDSLRYAVT TSFGSICYGS 301: LFTAAIRTLR WEIRGFRSKI CGNECLLCCV DFLFHLVETL VRFFNKYAYV QIAVYGKGFN KSARDAWELF QSTGVEALVA YDCSGAVLLM GTIFGGLITG 401: SCIGIWAWIK YSDRVIMVAS TAMLMGMVLE WW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)