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AT3G21500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27137770 (2016): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 1-deoxy-D-xylulose 5-phosphate synthase 1
Curator
Summary (TAIR10)
Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.
Computational
Description (TAIR10)
1-deoxy-D-xylulose 5-phosphate synthase 1 (DXPS1); FUNCTIONS IN: 1-deoxy-D-xylulose-5-phosphate synthase activity; INVOLVED IN: metabolic process, terpenoid biosynthetic process; EXPRESSED IN: stem, embryo, sepal, stamen; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826), Deoxyxylulose-5-phosphate synthase (InterPro:IPR005477), Transketolase-like, C-terminal (InterPro:IPR015941), Dehydrogenase, E1 component (InterPro:IPR001017); BEST Arabidopsis thaliana protein match is: Deoxyxylulose-5-phosphate synthase (TAIR:AT4G15560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1154eggNOG:ENOG410IT57EMBL:CP002686EnsemblPlants:AT3G21500
EnsemblPlants:AT3G21500.1entrez:821704ExpressionAtlas:F4IXL7Gene3D:3.40.50.920
Gene3D:3.40.50.970GeneID:821704GO:GO:0008661GO:GO:0016114
Gramene:AT3G21500.1gramene_pathway:2.2.1.7gramene_pathway:NONMEVIPP-PWYgramene_plant_reactome:1119464
gramene_plant_reactome:1119594gramene_plant_reactome:6876271gramene_plant_reactome:6877099HAMAP:MF_00315
hmmpanther:PTHR11624hmmpanther:PTHR11624:SF83InterPro:IPR005474InterPro:IPR005475
InterPro:IPR005477InterPro:IPR009014InterPro:IPR020826InterPro:IPR029061
InterPro:IPR033247InterPro:IPR033248iPTMnet:F4IXL7KEGG:00730+2.2.1.7
KEGG:00900+2.2.1.7KEGG:ath:AT3G21500KO:K01662PANTHER:PTHR11624
PaxDb:F4IXL7Pfam:PF02779Pfam:PF02780Pfam:PF13292
PROSITE:PS00801PROSITE:PS00802ProteinModelPortal:F4IXL7Proteomes:UP000006548
RefSeq:NP_566686.2scanprosite:PS00801scanprosite:PS00802SMART:SM00861
SMR:F4IXL7STRING:3702.AT3G21500.2SUPFAM:SSF52518SUPFAM:SSF52922
TAIR:AT3G21500tair10-symbols:DXPS1UniGene:At.27992unipathway:UPA00064
UniProt:F4IXL7
Coordinates (TAIR10) chr3:-:7573907..7576594
Molecular Weight (calculated) 69717.80 Da
IEP (calculated) 8.08
GRAVY (calculated) -0.13
Length 640 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYQTQINKF SQMALSVFAF PSYINRNPSL KYLKPSSMSS TKYSKVRATT FSEKGEYYSN RPPTPLLDTI NHPMHMKNLS IKELKVLSDE LRSDVIFNVS
101: KTGGHLGSNL GVVELTVALH YIFNTPHDKI LWDVGHQSYP HKILTGRRGK MKTIRQTNGL SGYTKRRESE HDSFGTGHSS TTLSAGLGMA VGRDLKGMNN
201: SVVSVIGDGA MTAGQAYEAM NNAGYLHSNM IVILNDNKQV SLPTANLDGP TQPVGALSCA LSRLQSNCGM IRETSSTLFE ELGFHYVGPV DGHNIDDLVS
301: ILETLKSTKT IGPVLIHVVT EKGRGYPYAE RADDKYHVLK FDPETGKQFK NISKTQSYTS CFVEALIAEA EADKDIVAIH AAMGGGTMLN LFESRFPTRC
401: FDVGIAEQHA VTFAAGLACE GLKPFCTIYS SFMQRAYDQV VHDVDLQKLP VRFAIDRAGL MGADGPTHCG AFDVTFMACL PNMIVMAPSD EAELFNMVAT
501: AAAIDDRPSC FRYHRGNGIG VSLPPGNKGV PLQIGRGRIL RDGERVALLG YGSAVQRCLE AASMLSERGL KITVADARFC KPLDVALIRS LAKSHEVLIT
601: VEEGSIGGFG SHVVQFLALD GLLDGKLKVY RTWITNGSTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)