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AT2G29350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.441
vacuole 0.388
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : senescence-associated gene 13
Curator
Summary (TAIR10)
senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase
Computational
Description (TAIR10)
senescence-associated gene 13 (SAG13); CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29290.2); Has 124599 Blast hits to 124224 proteins in 3643 species: Archae - 998; Bacteria - 81817; Metazoa - 5872; Fungi - 6443; Plants - 2971; Viruses - 5; Other Eukaryotes - 26493 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G29350-MONOMERBioCyc:ARA:GQT-1577-MONOMEREC:1.1.1.-eggNOG:COG1028
eggNOG:KOG0725EMBL:AC004561EMBL:AY065111EMBL:AY081642
EMBL:AY085321EMBL:CP002685EnsemblPlants:AT2G29350EnsemblPlants:AT2G29350.1
EnsemblPlants:AT2G29350.2EnsemblPlants:AT2G29350.3entrez:817484ExpressionAtlas:Q9ZW18
Gene3D:3.40.50.720GeneID:817484Genevisible:Q9ZW18GO:GO:0002213
GO:GO:0004022GO:GO:0007568hmmpanther:PTHR24322hmmpanther:PTHR24322:SF641
IntAct:Q9ZW18InterPro:IPR002347InterPro:IPR016040InterPro:IPR020904
KEGG:ath:AT2G29350OMA:HIGSSMTPANTHER:PTHR24322PaxDb:Q9ZW18
Pfam:PF00106Pfam:Q9ZW18PhylomeDB:Q9ZW18PIR:C84695
PRIDE:Q9ZW18PRINTS:PR00080PRINTS:PR00081PRO:PR:Q9ZW18
PROSITE:PS00061ProteinModelPortal:Q9ZW18Proteomes:UP000006548RefSeq:NP_001031442.1
RefSeq:NP_180496.1RefSeq:NP_973558.1scanprosite:PS00061SMR:Q9ZW18
STRING:3702.AT2G29350.1SUPFAM:SSF51735TAIR:AT2G29350tair10-symbols:SAG13
UniGene:At.28588UniProt:Q9ZW18
Coordinates (TAIR10) chr2:+:12601036..12602222
Molecular Weight (calculated) 28821.40 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.01
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKEGGLGEN SRWSLGGMTA LVTGGSKGIG EAVVEELAML GAKVHTCARD ETQLQERLRE WQAKGFQVTT SVCDVSSRDQ RVKLMETVSS LYQGKLNILV
101: NNVGTSIFKP TTEYTAEDFS FVMATNLESA FHLSQLAHPL LKASGSGSIV LISSAAGVVH VNVGSIYGAT KGAMNQLARN LACEWASDNI RTNSVCPWYI
201: TTPLSNDFFD EEFKKEAVRT TPMGRVGEAN EVSPLVAFLC LPSASYITGQ TICVDGGATV NGFSFKTMP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)