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AT4G15540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.972
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EamA-like transporter family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EamA-like transporter family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT5G40230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSESeggNOG:ENOG41108VKEMBL:AK117451EMBL:AL161541
EMBL:AY080726EMBL:CP002687EMBL:Z97339EnsemblPlants:AT4G15540
EnsemblPlants:AT4G15540.1entrez:827227GeneID:827227GO:GO:0005886
GO:GO:0006810GO:GO:0016021GO:GO:0022857GO:GO:0055085
hmmpanther:PTHR31218hmmpanther:PTHR31218:SF48HOGENOM:HOG000237441InParanoid:F4JK59
InterPro:IPR000620InterPro:IPR030184KEGG:ath:AT4G15540OMA:QTHIMEI
PANTHER:PTHR31218PaxDb:F4JK59Pfam:F4JK59Pfam:PF00892
PhylomeDB:F4JK59PIR:B71420PRIDE:F4JK59PRO:PR:F4JK59
ProteinModelPortal:F4JK59Proteomes:UP000006548RefSeq:NP_567469.2SUPFAM:0043518
TAIR:AT4G15540TMHMM:TMhelixUniGene:At.33169UniProt:F4JK59
Coordinates (TAIR10) chr4:+:8873394..8875186
Molecular Weight (calculated) 38000.00 Da
IEP (calculated) 8.44
GRAVY (calculated) 0.75
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MREETVSWKY FKRDVVPFTA MIAIECTTVG SSILYKAATL RGFSFYVFVF YAYVGATLVL LLLSLIFGRS RSLPTAKSSL FFKIFLLALL GLTSRVAGCK
101: GIEYSSPTLS SAISNLTPAF TFILAIFFRM EQVMLRSSAT QAKIIGTIVS ISGALVIVLY KGPKLLVAAS FTSFESSWII GGLLLGLQFL LLSVWFILQT
201: HIMEIYPEEI AVVFCYNLCA TLISGTVCLL VEKDLNSWQL KPGFSLASVI YSGLFDTSLG SVIHTWGLHV KGPVYISLFK PLSIAIAVAM AAIFLGDTLH
301: LGSVIGSVIL SFGFYTVIWG KAREDSTKTV SDSEQSLLLP SHDREED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)