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AT4G13950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ralf-like 31
Curator
Summary (TAIR10)
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational
Description (TAIR10)
ralf-like 31 (RALFL31); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 24 (TAIR:AT3G23805.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3JReggNOG:ENOG41118KMEMBL:AL161537EMBL:AY085773
EMBL:BT024552EMBL:CP002687EMBL:Z97335EnsemblPlants:AT4G13950
EnsemblPlants:AT4G13950.1entrez:827029GeneID:827029Genevisible:Q2HIM9
GO:GO:0004871GO:GO:0005179GO:GO:0005622GO:GO:0007267
GO:GO:0009506GO:GO:0019722GO:GO:0048046Gramene:AT4G13950.1
hmmpanther:PTHR33136hmmpanther:PTHR33136:SF10HOGENOM:HOG000237626InParanoid:Q2HIM9
InterPro:IPR008801iPTMnet:Q2HIM9KEGG:ath:AT4G13950OMA:RYIGYET
PaxDb:Q2HIM9Pfam:PF05498Pfam:Q2HIM9PhylomeDB:Q2HIM9
PIR:D71400PRIDE:Q2HIM9PRO:PR:Q2HIM9ProteinModelPortal:Q2HIM9
Proteomes:UP000006548RefSeq:NP_567413.1TAIR:AT4G13950tair10-symbols:RALFL31
TMHMM:TMhelixUniGene:At.20340UniProt:Q2HIM9
Coordinates (TAIR10) chr4:-:8058268..8058609
Molecular Weight (calculated) 12677.20 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.18
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MFNSTALVIF AILFLLISAD AFPIPSPNGE IDAMLIRNSI IGEDEDLMPT EISRRVLMAQ KRYIGYETLR RDMVPCQKPG ASYYDCRSGQ ANSYSRGCDT
101: ITRCARDTND INT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)