suba logo
AT5G16060.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21311031 (2011): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cytochrome c oxidase biogenesis protein Cmc1-like
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cytochrome c oxidase biogenesis protein Cmc1-like; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase biogenesis protein Cmc1-like (InterPro:IPR013892); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
DNASU:831463eggNOG:ENOG4111YK0eggNOG:KOG4624EMBL:AK119063
EMBL:AL391145EMBL:BT004685EMBL:CP002688EnsemblPlants:AT5G16060
EnsemblPlants:AT5G16060.1entrez:831463GeneID:831463Gramene:AT5G16060.1
hmmpanther:PTHR22977HOGENOM:HOG000239925IntAct:Q9LFR9InterPro:IPR013892
KEGG:ath:AT5G16060KO:K18171OMA:QARENHVPfam:PF08583
PhylomeDB:Q9LFR9PIR:T51389Proteomes:UP000006548RefSeq:NP_197110.1
STRING:3702.AT5G16060.1TAIR:AT5G16060UniGene:At.27593UniGene:At.66728
UniProt:Q9LFR9
Coordinates (TAIR10) chr5:+:5246161..5247209
Molecular Weight (calculated) 10941.20 Da
IEP (calculated) 8.94
GRAVY (calculated) -0.64
Length 95 amino acids
Sequence (TAIR10)
(BLAST)
1: MGSYVEQARE NHVKKKVEEA LRSKMKAKAL MECDQYVSKY AQCATGRTFS VVWTCRKQAR ELNTCLHQFT NDNVLEEMKR AYMVQEEGKV SASAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)