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AT1G76300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : snRNP core protein SMD3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
snRNP core protein SMD3 (SmD3); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nuclear body, nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G20580.1); Has 1247 Blast hits to 1247 proteins in 231 species: Archae - 2; Bacteria - 0; Metazoa - 471; Fungi - 341; Plants - 223; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1958eggNOG:KOG3172EMBL:AC009978EMBL:AC012394
EMBL:AF380651EMBL:AY054149EMBL:AY087251EMBL:CP002684
EnsemblPlants:AT1G76300EnsemblPlants:AT1G76300.1entrez:843963GeneID:843963
Genevisible:Q9S7E6GO:GO:0000243GO:GO:0000245GO:GO:0000387
GO:GO:0000398GO:GO:0003723GO:GO:0005634GO:GO:0005682
GO:GO:0005685GO:GO:0005686GO:GO:0005687GO:GO:0005689
GO:GO:0005730GO:GO:0005829GO:GO:0016604GO:GO:0034715
GO:GO:0034719GO:GO:0071010GO:GO:0071011GO:GO:0071013
GO:GO:0097526Gramene:AT1G76300.1hmmpanther:PTHR23338HOGENOM:HOG000182712
InParanoid:Q9S7E6InterPro:IPR001163InterPro:IPR010920InterPro:IPR027141
KEGG:ath:AT1G76300KO:K11088OMA:IVSVEMKPANTHER:PTHR23338
PaxDb:Q9S7E6Pfam:PF01423Pfam:Q9S7E6PhylomeDB:Q9S7E6
PIR:E96790PRIDE:Q9S7E6PRO:PR:Q9S7E6ProteinModelPortal:Q9S7E6
Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165RefSeq:NP_177757.1
SMART:SM00651SMR:Q9S7E6STRING:3702.AT1G76300.1SUPFAM:SSF50182
TAIR:AT1G76300tair10-symbols:SmD3UniGene:At.16581UniProt:Q9S7E6
Coordinates (TAIR10) chr1:+:28625957..28627080
Molecular Weight (calculated) 13812.90 Da
IEP (calculated) 10.90
GRAVY (calculated) -0.31
Length 128 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRSLGIPVK LLHESSGHIV SVEMKSGELY RGSMIECEDN WNCQLENITY TAKDGKVSQL EHVFIRGSLV RFLVIPDMLK NAPMFKDVRG KGKSASLGVG
101: RGRGAAMRAK GTGRGTGGGR GAVPPVRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)