AT1G62820.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.973 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Calcium-binding EF-hand family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G12310.1); Has 16075 Blast hits to 13795 proteins in 1483 species: Archae - 0; Bacteria - 30; Metazoa - 6203; Fungi - 4627; Plants - 3186; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:23263822..23264268 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 16579.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.62 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 148 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSKDGLSNDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTESQL KSIITTENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV 101: AVADLRHILT SIGEKLQPSE FDEWIKEVDV GSDGKIRYED FIARMVAK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)