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AT1G62820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.973
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:14617066 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G12310.1); Has 16075 Blast hits to 13795 proteins in 1483 species: Archae - 0; Bacteria - 30; Metazoa - 6203; Fungi - 4627; Plants - 3186; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5126eggNOG:KOG0027EMBL:AC007190EMBL:AY065248
EMBL:BT006063EMBL:CP002684EnsemblPlants:AT1G62820EnsemblPlants:AT1G62820.1
entrez:842581Gene3D:1.10.238.10GeneID:842581Genevisible:Q8VZ50
GO:GO:0005509GO:GO:0005634GO:GO:0005829GO:GO:0009409
Gramene:AT1G62820.1hmmpanther:PTHR23050hmmpanther:PTHR23050:SF214HOGENOM:HOG000233018
InParanoid:Q8VZ50InterPro:IPR002048InterPro:IPR011992InterPro:IPR018247
KEGG:ath:AT1G62820KO:K13448OMA:WIGGVEVPaxDb:Q8VZ50
Pfam:PF13405Pfam:PF13499Pfam:Q8VZ50Pfscan:PS50222
PhylomeDB:Q8VZ50PRIDE:Q8VZ50PRO:PR:Q8VZ50PROSITE:PS00018
PROSITE:PS50222ProteinModelPortal:Q8VZ50Proteomes:UP000006548RefSeq:NP_176470.1
scanprosite:PS00018SMART:SM00054SMR:Q8VZ50STRING:3702.AT1G62820.1
SUPFAM:SSF47473TAIR:AT1G62820UniGene:At.28547UniProt:Q8VZ50
Coordinates (TAIR10) chr1:-:23263822..23264268
Molecular Weight (calculated) 16579.80 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.36
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKDGLSNDQ VSSMKEAFML FDTDGDGKIA PSELGILMRS LGGNPTESQL KSIITTENLS SPFDFNRFLD LMAKHLKTEP FDRQLRDAFK VLDKEGTGFV
101: AVADLRHILT SIGEKLQPSE FDEWIKEVDV GSDGKIRYED FIARMVAK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)