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AT2G44310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.685
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding EF-hand family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF hand family protein (TAIR:AT1G54530.1); Has 278 Blast hits to 269 proteins in 34 species: Archae - 0; Bacteria - 3; Metazoa - 2; Fungi - 2; Plants - 243; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0HGeggNOG:ENOG4111VSVEMBL:AC004521EMBL:AY072372
EMBL:AY086670EMBL:AY114617EMBL:CP002685EnsemblPlants:AT2G44310
EnsemblPlants:AT2G44310.1entrez:819039Gene3D:1.10.238.10GeneID:819039
GO:GO:0005509GO:GO:0005829Gramene:AT2G44310.1hmmpanther:PTHR10891
hmmpanther:PTHR10891:SF597HOGENOM:HOG000240136InterPro:IPR002048InterPro:IPR011992
InterPro:IPR018247KEGG:ath:AT2G44310OMA:EMRRIMLPfam:PF13499
Pfscan:PS50222PhylomeDB:O64866PIR:T02387PROSITE:PS00018
PROSITE:PS50222Proteomes:UP000006548RefSeq:NP_566015.1scanprosite:PS00018
SMART:SM00054SMR:O64866STRING:3702.AT2G44310.1SUPFAM:SSF47473
TAIR:AT2G44310UniGene:At.19668UniProt:O64866
Coordinates (TAIR10) chr2:+:18309285..18309713
Molecular Weight (calculated) 15821.50 Da
IEP (calculated) 4.10
GRAVY (calculated) -0.31
Length 142 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVVLIDGST VRSFVDDEEQ FKKSVDERFA ALDLNKDGVL SRSELRKAFE SMRLLESHFG VDVVTPQDEL TNLYDSIFEK FDTDQSGSVD LEEFRSEMKK
101: IVLAIADGLG SCPITMVLDD DDDNFLKKAA DLEASKLEKA SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)