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AT4G09670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Oxidoreductase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase, N-terminal (InterPro:IPR000683), Oxidoreductase, C-terminal (InterPro:IPR004104), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: Glyceraldehyde-3-phosphate dehydrogenase-like family protein (TAIR:AT1G34200.1); Has 17148 Blast hits to 17147 proteins in 2160 species: Archae - 344; Bacteria - 12203; Metazoa - 250; Fungi - 605; Plants - 99; Viruses - 0; Other Eukaryotes - 3647 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G09670-MONOMERDNASU:826553EC:1.-.-.-eggNOG:COG0673
eggNOG:KOG2741EMBL:AK220867EMBL:AL049482EMBL:AL161515
EMBL:AY045851EMBL:AY085911EMBL:BT002355EMBL:CP002687
EnsemblPlants:AT4G09670EnsemblPlants:AT4G09670.1entrez:826553EvolutionaryTrace:Q9SZ83
Gene3D:3.40.50.720GeneID:826553Genevisible:Q9SZ83GO:GO:0005829
GO:GO:0016491Gramene:AT4G09670.1hmmpanther:PTHR22604hmmpanther:PTHR22604:SF132
HOGENOM:HOG000227440InParanoid:Q9SZ83InterPro:IPR000683InterPro:IPR016040
iPTMnet:Q9SZ83KEGG:ath:AT4G09670OMA:HDFIIPYPaxDb:Q9SZ83
PDB:1YDWPDB:2Q4EPDBsum:1YDWPDBsum:2Q4E
Pfam:PF01408Pfam:Q9SZ83PhylomeDB:Q9SZ83PIR:T04014
PRIDE:Q9SZ83PRO:PR:Q9SZ83ProteinModelPortal:Q9SZ83Proteomes:UP000006548
RefSeq:NP_192705.1SMR:Q9SZ83STRING:3702.AT4G09670.1SUPFAM:SSF51735
SUPFAM:SSF55347TAIR:AT4G09670UniGene:At.23812UniProt:Q9SZ83
Coordinates (TAIR10) chr4:-:6107382..6109049
Molecular Weight (calculated) 39564.20 Da
IEP (calculated) 5.69
GRAVY (calculated) -0.11
Length 362 amino acids
Sequence (TAIR10)
(BLAST)
001: MATETQIRIG VMGCADIARK VSRAIHLAPN ATISGVASRS LEKAKAFATA NNYPESTKIH GSYESLLEDP EIDALYVPLP TSLHVEWAIK AAEKGKHILL
101: EKPVAMNVTE FDKIVDACEA NGVQIMDGTM WVHNPRTALL KEFLSDSERF GQLKTVQSCF SFAGDEDFLK NDIRVKPGLD GLGALGDAGW YAIRATLLAN
201: NFELPKTVTA FPGAVLNEAG VILSCGASLS WEDGRTATIY CSFLANLTME ITAIGTKGTL RVHDFIIPYK ETEASFTTST KAWFNDLVTA WVSPPSEHTV
301: KTELPQEACM VREFARLVGE IKNNGAKPDG YWPSISRKTQ LVVDAVKESV DKNYQQISLS GR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)