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AT4G02760.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G02740.1); Has 491 Blast hits to 434 proteins in 99 species: Archae - 0; Bacteria - 4; Metazoa - 330; Fungi - 45; Plants - 97; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Protein Annotations
EMBL:AC004044EMBL:AL161495EMBL:CP002687EnsemblPlants:AT4G02760
EnsemblPlants:AT4G02760.1EnsemblPlants:AT4G02760.2entrez:828184ExpressionAtlas:Q9SY03
Gene3D:3.80.10.10GeneID:828184Genevisible:Q9SY03HOGENOM:HOG000006094
InParanoid:Q9SY03InterPro:IPR001810InterPro:IPR032675KEGG:ath:AT4G02760
KO:K10268Pfam:Q9SY03PhylomeDB:Q9SY03PIR:B85035
PRIDE:Q9SY03PRO:PR:Q9SY03ProteinModelPortal:Q9SY03Proteomes:UP000006548
RefSeq:NP_001078348.4RefSeq:NP_192185.4SMR:Q9SY03SUPFAM:SSF52047
SUPFAM:SSF81383TAIR:AT4G02760UniGene:At.47914UniProt:Q9SY03
Coordinates (TAIR10) chr4:-:1224336..1227857
Molecular Weight (calculated) 55478.20 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.06
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAPNPKRPC LVPLGTSSIE NPCSLPIAPD FNQSNIDLTI SSFLSLSDLP LFSLPLSIGC SFDRVLDNVI PSIAGTSRDE FDQDRFLDRT LQLASLLYKS
101: TKRCIRKRAT LQNSTSWPLL PELTIKVFSM LDTKSLMQAS ACCTMFNKCA MDRVCYSHID LTTAAEDVDN GVVCVMIHRA GKELRSLKLG SISSSAEPTT
201: SLLTRSCLTP LTFNHGFTGG HLRSLHLYHL RMIDCGSLSP VLSACLNLTD LKIVGLDNPL EQLGLLTRNC RLIEHLFIEI YGAAGLITDS SLLEFAANCP
301: NLSSISLLGF LLNDAILQKL IKGFRRLKHI NLSSSPEISG CFFRGLELCG KDSPLETLIL RDCYILKESE VLLFLNSLLA GDFKYIRLID VSNVDGLVCD
401: GGNRTFEPRF PIEELKKQRS NVTFVAIFES QSSLSSSRFP LEELNKERPG LTFVAEFRSP SPSESDVRSP SPSSSSDSSS SSDSSSSSSS GESSDESGTE
501: EEEDED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)